Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains

Jang, Hyein; Woo, Jungha; Lee, Youyoung; Negrete, Flavia; Finkelstein, Samantha; Chase, Hannah R.; Addy, Nicole; Ewing, Laura; Beaubrun, Junia Jean Gilles; Patel, Isha; Gangiredla, Jayanthi; Eshwar, Athmanya; Jaradat, Ziad W.; Seo, Kunho; Shabarinath, Srikumar; Fanning, Séamus; Stephan, Roger; Lehner, Angelika; Tall, Ben D.; Gopinath, Gopal R.

doi:10.1186/s40793-018-0339-6

Environmental Microbiome

Table 1 Classification and general features of C. sakazakii strains used in this study

From: Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains

MGS ID	Property	Term	Evidence Code^a
	Classification	Domain: Bacteria
		Phylum: Proteobacteria
		Class: Gammaproteobacteria
		Order: Enterobacteriales
		Family: Enterobacteriaceae
		Genus: Cronobacter
		Species: sakazakii
		Strains: MOD1_AS-2, MOD1_AS-4, MOD1_AS-13, MOD1_AS-15, MOD1_Jor20, MOD1_Jor22, MOD1_Jor44, MOD1_Jor93, MOD1_Jor96, MOD1_Jor103, MOD1_Jor146, MOD1_Jor148, MOD1_Jor151, MOD1_Jor154, MOD1_Jor172, MOD1_Jor173, MOD1_Jor178, MOD1_Jor183, MOD1_KW3, MOD1_KW13, MOD1_O21–13, MOD1_O21–16, MOD1_O26–1, MOD1_O26–4, MOD1_O23mB, MOD1_788569
	Gram stain	Negative	TAS [2]
	Cell shape	Rod-shaped	TAS [2]
	Motility	Motile by peritrichous flagella	TAS [2]
	Sporulation	Non-sporulating	TAS [2]
	Temperature range	6 to 45 °C	TAS [2]
	Optimum temperature	37 °C	TAS [2]
	pH range	pH 5 to 10	TAS [2]
	Carbon source	α-D-glucose, β-D-fructose, D-galactose, trehalose, D-mannose, α-melibiose, sucrose, raffinose, maltotriose, maltose, α-lactose, 1–0-methyl α/β-galactopyranoside, cellobiose, β-gentiobiose, 1–0-methyl β-D-glucopyranoside, aesculin, L-arabinose, D-xylose, glycerol, D-mannitol, L-malate, D-glucuronate, D-galacturonate, 2-keto-D-gluconate, N-acetyl D-glucosamine, arbutin, DL-α-glycerol-phosphate, dihydroxyacetone, D-ribose, L-lyxose, pyruvic acid, D-gluconate, DL-lactate, succinate, fumarate, DL-glycerate, D-glucosamine, L-aspartate, L-glutamate, L-proline, D-alanine, L-alanine and L-serine.	TAS [2]
MIG5–6	Habitat	Environment, Eukaryotic plant-origin, Human	TAS [2]
MIG5–6	Energy source	Chemoheterotrophic	TAS [2]
MIG6–3	Salinity	Grows up to 10% NaCl	TAS [2]
MIG5–22	Oxygen requirement	Facultatively anaerobic	TAS [2]
MIG5–15	Biotic relationship	Eukaryotic plant-origin, Human	TAS [2]
MIG5–14	Pathogenicity	Human pathogen	TAS [2]
MIG5–23	Isolation	Bacteriological Analytical Manual, ISO/TS 22964:2017	TAS [62,63,64]
MIG5–4	Geographic location	USA, Europe, Asia, Central America, South America	TAS [2]
MIG5–5	Sample collection	Plant-origin	TAS [2]
MIG5–4.1	Latitude	variable	TAS [2]
MIG5–4.2	Longitude	variable	TAS [2]
MIG5–4.4	Altitude	variable	TAS [2]

^aEvidence codes: TAS Traceable author statement (i.e., a direct report exists in the literature). These codes are from the Gene Ontology project [42]

Back to article page

ISSN: 2524-6372

Contact us

Submission enquiries: journalsubmissions@springernature.com