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Table 4 Number of genes associated with general COG functional category prediction

From: The draft genome sequence of “Nitrospira lenta” strain BS10, a nitrite oxidizing bacterium isolated from activated sludge

Code

Value

%agea

Description

J

163

4.17

Translation, ribosomal structure and biogenesis

A

0

0

RNA processing and modification

K

148

3.79

Transcription

L

142

3.64

Replication, recombination and repair

B

1

0.03

Chromatin structure and dynamics

D

48

1.23

Cell cycle control, Cell division, chromosome partitioning

V

44

1.13

Defense mechanisms

T

256

6.55

Signal transduction mechanisms

M

303

7.76

Cell wall/membrane biogenesis

N

114

2.92

Cell motility

U

119

3.05

Intracellular trafficking and secretion

O

151

3.87

Posttranslational modification, protein turnover, chaperones

C

205

5.25

Energy production and conversion

G

133

3.40

Carbohydrate transport and metabolism

E

198

5.07

Amino acid transport and metabolism

F

59

1.51

Nucleotide transport and metabolism

H

136

3.48

Coenzyme transport and metabolism

I

76

1.95

Lipid transport and metabolism

P

156

3.99

Inorganic ion transport and metabolism

Q

77

1.97

Secondary metabolites biosynthesis, transport and catabolism

R

389

9.96

General function prediction only

S

221

5.66

Function unknown

1298

33.22

Not in COGs

  1. aThe total is based on the total number of protein coding genes in the genome