Skip to main content

Advertisement

Table 4 Number of genes associated with general COG functional category prediction

From: The draft genome sequence of “Nitrospira lenta” strain BS10, a nitrite oxidizing bacterium isolated from activated sludge

Code Value %agea Description
J 163 4.17 Translation, ribosomal structure and biogenesis
A 0 0 RNA processing and modification
K 148 3.79 Transcription
L 142 3.64 Replication, recombination and repair
B 1 0.03 Chromatin structure and dynamics
D 48 1.23 Cell cycle control, Cell division, chromosome partitioning
V 44 1.13 Defense mechanisms
T 256 6.55 Signal transduction mechanisms
M 303 7.76 Cell wall/membrane biogenesis
N 114 2.92 Cell motility
U 119 3.05 Intracellular trafficking and secretion
O 151 3.87 Posttranslational modification, protein turnover, chaperones
C 205 5.25 Energy production and conversion
G 133 3.40 Carbohydrate transport and metabolism
E 198 5.07 Amino acid transport and metabolism
F 59 1.51 Nucleotide transport and metabolism
H 136 3.48 Coenzyme transport and metabolism
I 76 1.95 Lipid transport and metabolism
P 156 3.99 Inorganic ion transport and metabolism
Q 77 1.97 Secondary metabolites biosynthesis, transport and catabolism
R 389 9.96 General function prediction only
S 221 5.66 Function unknown
1298 33.22 Not in COGs
  1. aThe total is based on the total number of protein coding genes in the genome