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Table 3 Genome statistics

From: The draft genome sequence of “Nitrospira lenta” strain BS10, a nitrite oxidizing bacterium isolated from activated sludge

Attribute

Value

Genome size (bp)

3,756,190

DNA coding (bp)

3,487,097

DNA G + C (%)

57.9

DNA scaffolds

22

Total genes

3968

Protein coding genes

3907

RNA genes

61

rRNA genes

3

tRNA genes

46

Pseudo genes

0

Genes in internal clusters

Genes with function prediction

1990

Genes assigned to COGs

2609

Genes with Pfam domains

3868

Genes with signal peptidesa

196

Genes with transmembrane helices

965

CRISPR repeats

0

  1. aOnly signal peptides with a prediction probability greater 70% were taken into consideration