Table 3 Genome statistics
Attribute | CD 337 | TAP 175 | BSAS1 3 | EBP 3070 | ||||
|---|---|---|---|---|---|---|---|---|
Value | % of Total | Value | % of Total | Value | % of Total | Value | % of Total | |
Genome size (bp) | 2,594,337 | 100 | 2,506,748 | 100 | 2,617,996 | 100 | 2,541,668 | 100 |
DNA coding (bp) | 2,182,130 | 84.11 | 2,136,251 | 85.22 | 2,213,516 | 84.55 | 2,118,751 | 83.36 |
DNA G + C (bp) | 945,895 | 36.46 | 909,448 | 36.28 | 947,714 | 36.20 | 920,592 | 36.22 |
DNA scaffolds | 1 | 100 | 57 | 100 | 83 | 100 | 71 | 100 |
Total genes | 2743 | 100 | 2638 | 100 | 2796 | 100 | 2740 | 100 |
Protein coding genes | 2593 | 94.53 | 2515 | 95.3 | 2668 | 95.4 | 2611 | 95.3 |
RNA genes | 28 | 1.0 | 6 | 0.2 | 8 | 0.3 | 9 | 0.3 |
Pseudo genes | 38 | 1.4 | 43 | 1.6 | 57 | 2.0 | 102 | 3.7 |
Genes in internal clusters | N/D | – | N/D | – | N/D | – | N/D | – |
Genes with function prediction | 2031 | 74.04 | 1928 | 73.1 | 1957 | 70.0 | 1954 | 71.3 |
Genes assigned to COGs | 2486 | 90.6 | 2429 | 92.1 | 2472 | 88.4 | 2432 | 88.7 |
Genes with Pfam domains | 2026 | 73.9 | 1982 | 75.1 | 2040 | 73.0 | 2002 | 73.1 |
Genes with signal peptides | 85 | 3.1 | 83 | 3.1 | 83 | 3.0 | 85 | 3.1 |
Genes with transmembrane helices | 392 | 14.3 | 384 | 14.5 | 386 | 13.8 | 389 | 14.2 |
CRISPR repeats | 1 | 0.04 | 2 | 0.07 | 1 | 0.03 | 0 | 0 |