Skip to main content

Advertisement

Table 2 Project information

From: One complete and three draft genome sequences of four Brochothrix thermosphacta strains, CD 337, TAP 175, BSAS1 3 and EBP 3070

MIGS ID Property Term, CD 337 Term, TAP 175 Term, BSAS1 3 Term, EBP 3070
MIGS 31 Finishing quality Complete circular genome Draft genome Draft genome Draft genome
MIGS-28 Libraries used 20-kb Template Preparation Using BluePippin Size-Selection System (15-kb size cutoff) NEB Next Fast DNA fragmentation and library prep (NEB Biolabs) NEB Next Fast DNA fragmentation and library prep (NEB Biolabs) NEB Next Fast DNA fragmentation and library prep (NEB Biolabs)
MIGS 29 Sequencing platforms PacBio RSII (Pacific BioSciences) Ion S5 (Ion Torrent) Ion S5 (Ion Torrent) Ion S5 (Ion Torrent)
MIGS 31.2 Fold coverage 526.48 270.67 206.01 243.65
MIGS 30 Assemblers CANU version 1.3 SPAdes (version 3.9.0) SPAdes (version 3.9.0) SPAdes (version 3.9.0)
MIGS 32 Gene calling method MicroScope Genoscope Plateform [12] MicroScope Genoscope Plateform [12] MicroScope Genoscope Plateform [12] MicroScope Genoscope Plateform [12]
  Locus Tag BTCD BTTAP BTBSAS BTEBP
  Genbank ID ERZ500814 ERZ500815 ERZ500816 ERZ500817
  GenBank Date of Release 25 May 2018 25 May 2018 25 May 2018 25 May 2018
  GOLD ID     
  BIOPROJECT PRJEB25018 PRJEB25018 PRJEB25018 PRJEB25018
MIGS 13 Source Material Identifier     
  Project relevance Food spoiler Food spoiler Food spoiler Food spoiler