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Table 4 Number of genes associated with the 25 COG functional categories

From: Draft genomes of “Pectobacterium peruviense” strains isolated from fresh water in France

Code P. peruviense P. peruviense Description
A97-S13-F16 A350-S18-N16
Value %age Value %age
E 366 8.21 367 8.00 Amino acid transport and metabolism
G 362 8.12 356 7.76 Carbohydrate transport and metabolism
D 41 0.92 43 0.94 Cell cycle control, cell division, chromosome partitioning
N 110 2.47 107 2.33 Cell motility
M 239 5.36 244 5.32 Cell wall/membrane/envelope biogenesis
H 167 3.75 167 3.64 Coenzyme transport and metabolism
Z 1 0.02 1 0.02 Cytoskeleton
V 85 1.91 90 1.96 Defense mechanisms
C 226 5.07 225 4.91 Energy production and conversion
W 4 0.09 4 0.09 Extracellular structures
S 202 4.53 209 4.56 Function unknown
G 204 4.58 206 4.49 General function prediction only
P 242 5.43 240 5.23 Inorganic ion transport and metabolism
U 82 1.84 91 1.98 Intracellular trafficking, secretion, and vesicular transport
I 103 2.31 102 2.20 Lipid transport and metabolism
X 23 0.52 57 1.24 Mobilome: prophages, transposons
F 90 2.02 91 1.98 Nucleotide transport and metabolism
O 152 3.41 152 3.31 Posttranslational modification, protein turnover, chaperones
L 127 2.85 127 2.77 Replication, recombination and repair
A 1 0.02 1 0.02 RNA processing and modification
Q 59 1.32 59 1.29 Secondary metabolites biosynthesis, transport and catabolism
T 146 3.27 148 3.23 Signal transduction mechanisms
K 291 6.53 287 6.26 Transcription
J 238 5.34 239 5.21 Translation, ribosomal structure and biogenesis
898 20.14 974 21.23 Not in COGs
  1. The total %age is based on the total number of protein coding genes in the genome