Table 4 Number of genes associated with the 25 COG functional categories
From: Draft genomes of “Pectobacterium peruviense” strains isolated from fresh water in France
Code | P. peruviense | P. peruviense | Description | ||
|---|---|---|---|---|---|
A97-S13-F16 | A350-S18-N16 | ||||
Value | %age | Value | %age | ||
E | 366 | 8.21 | 367 | 8.00 | Amino acid transport and metabolism |
G | 362 | 8.12 | 356 | 7.76 | Carbohydrate transport and metabolism |
D | 41 | 0.92 | 43 | 0.94 | Cell cycle control, cell division, chromosome partitioning |
N | 110 | 2.47 | 107 | 2.33 | Cell motility |
M | 239 | 5.36 | 244 | 5.32 | Cell wall/membrane/envelope biogenesis |
H | 167 | 3.75 | 167 | 3.64 | Coenzyme transport and metabolism |
Z | 1 | 0.02 | 1 | 0.02 | Cytoskeleton |
V | 85 | 1.91 | 90 | 1.96 | Defense mechanisms |
C | 226 | 5.07 | 225 | 4.91 | Energy production and conversion |
W | 4 | 0.09 | 4 | 0.09 | Extracellular structures |
S | 202 | 4.53 | 209 | 4.56 | Function unknown |
G | 204 | 4.58 | 206 | 4.49 | General function prediction only |
P | 242 | 5.43 | 240 | 5.23 | Inorganic ion transport and metabolism |
U | 82 | 1.84 | 91 | 1.98 | Intracellular trafficking, secretion, and vesicular transport |
I | 103 | 2.31 | 102 | 2.20 | Lipid transport and metabolism |
X | 23 | 0.52 | 57 | 1.24 | Mobilome: prophages, transposons |
F | 90 | 2.02 | 91 | 1.98 | Nucleotide transport and metabolism |
O | 152 | 3.41 | 152 | 3.31 | Posttranslational modification, protein turnover, chaperones |
L | 127 | 2.85 | 127 | 2.77 | Replication, recombination and repair |
A | 1 | 0.02 | 1 | 0.02 | RNA processing and modification |
Q | 59 | 1.32 | 59 | 1.29 | Secondary metabolites biosynthesis, transport and catabolism |
T | 146 | 3.27 | 148 | 3.23 | Signal transduction mechanisms |
K | 291 | 6.53 | 287 | 6.26 | Transcription |
J | 238 | 5.34 | 239 | 5.21 | Translation, ribosomal structure and biogenesis |
– | 898 | 20.14 | 974 | 21.23 | Not in COGs |