Table 3 Genome statistics
From: Draft genomes of “Pectobacterium peruviense” strains isolated from fresh water in France
Attribute | P. peruviense A97-S13-F16 | P. peruviense A350-S18-N16 | ||
|---|---|---|---|---|
Value | % of Total | Value | % of Total | |
Genome size (pb) | 4,755,191 | 100.00 | 4,871,019 | 100.00 |
DNA coding (bp) | 4,108,775 | 86.41 | 4,211,847 | 86.47 |
DNA G + C (pb) | 2,425,147 | 51.00 | 2,489,091 | 51.10 |
DNA scaffolds | 61 | 73 | ||
Total genes | 4503 | 100.00 | 4635 | 100.00 |
Protein coding genes | 4459 | 99.02 | 4587 | 98.96 |
RNA genes | 44 | 0.97 | 48 | 1.03 |
Pseudo genes | NA | NA | ||
Genes in internal clusters | NA | NA | ||
Genes with function prediction | 3252 | 72.21 | 3338 | 72.01 |
Genes assigned to COGs | 3563 | 79.91 | 3613 | 78.77 |
Genes with Pfam domains | 3808 | 85.40 | 3903 | 85.09 |
Genes with signal peptides | 392 | 8.79 | 395 | 8.52 |
Genes with transmembrane helices | 1090 | 24.44 | 1095 | 23.62 |
CRISPR repeats | 3 | 2 | ||