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Table 3 Genome statistics

From: High-quality-draft genome sequence of the multiple heavy metal resistant bacterium Pseudaminobacter manganicus JH-7T

Attribute

Value

% of totala

Genome size (bp)

4,842,937

100

DNA coding (bp)

4,238,496

87.5

DNA G + C (bp)

2,963,726

61.2

DNA scaffolds

60

100

Total genesb

4685

100

Protein-coding genes

4504

96.2

RNA genes

71

1.7

Pseudo genes

110

2.3

Genes in internal clusters

1725

38.3

Genes with function prediction

3228

68.9

Genes assigned to COGs

3729

79.6

Genes with Pfam domains

3926

83.8

Genes with signal peptides

392

8.4

Genes with transmembrane helices

1119

23.9

CRISPR repeats

5

 
  1. aThe total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome
  2. bAlso includes 110 pseudogenes, 54 tRNA genes, 12 rRNAs and 5 ncRNA