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Table 3 Genome statistics

From: High-quality-draft genome sequence of the multiple heavy metal resistant bacterium Pseudaminobacter manganicus JH-7T

Attribute Value % of totala
Genome size (bp) 4,842,937 100
DNA coding (bp) 4,238,496 87.5
DNA G + C (bp) 2,963,726 61.2
DNA scaffolds 60 100
Total genesb 4685 100
Protein-coding genes 4504 96.2
RNA genes 71 1.7
Pseudo genes 110 2.3
Genes in internal clusters 1725 38.3
Genes with function prediction 3228 68.9
Genes assigned to COGs 3729 79.6
Genes with Pfam domains 3926 83.8
Genes with signal peptides 392 8.4
Genes with transmembrane helices 1119 23.9
CRISPR repeats 5  
  1. aThe total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome
  2. bAlso includes 110 pseudogenes, 54 tRNA genes, 12 rRNAs and 5 ncRNA