Table 3 Genome statistics
Attribute | Value | % of Totala |
|---|---|---|
Genome size (bp) | 3,856,229 | 100 |
DNA coding (bp) | 3,424,790 | 88.81 |
DNA G + C (bp) | 1,794,204 | 46.53 |
DNA scaffolds | 54 | – |
Total genes | 3846 | 100 |
Protein coding genes | 3657 | 95.09 |
RNA genes | 95 | 2.47 |
Pseudo genes | 94 | 2.44 |
Genes in internal clusters | NA | – |
Genes with function prediction | 2790 | 72.54 |
Genes assigned to COGs | 2697 | 70.12 |
Genes with Pfam domains | 3241 | 84.27 |
Genes with signal peptides | 2,48 | 6.45 |
Genes with transmembrane helices | 2500 | 65.00 |
CRISPR repeats | 0 | 0.00 |