Table 7 Metagenome properties
From: Functional and taxonomic classification of a greenhouse water drain metagenome
Label | Metagenome label | Comment |
|---|---|---|
Number of contigs | 7003 | |
GBp | 11.0 GBp | |
Number of features identified | 25,735 | Total number of predicted protein features from the assembly |
CDS | 21,700 | Total number of proteins annotated by Blast2GO and Interpro. |
rRNA | 18,612 | Total number of reads determined as ribosomal genes using RiboPicker version 0.4.3. |
CDSs with GO | 14,328 | Number of proteins with GO terms. Number of reads mapped to a protein. |
CDSs with UniRef90 | 1,619,062 | |
CDS with SEED subsystem | 786,622 | |
Alpha diversity | 2.04 and 1.99 | Alpha diversity was determinate at order level comparing MG-RAST and Kraken results. Shannon index was measured using Phyloseq. |