Table 3 Genome statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 3,584,631 | 100% |
DNA coding (bp) | 3,211,842 | 89.60% |
DNA G + C (bp) | 2,118,687 | 59.10% |
DNA scaffolds | 1 | 100% |
Total genes | 3347 | 100% |
Protein coding genes | 3261 | 97.43% |
RNA genes | 86 | 2.57% |
Pseudo genes | 73 | 2.18% |
Genes in internal clusters | 611 | 18.26% |
Genes with function prediction | 2815 | 84.11% |
Genes assigned to COGs | 2568 | 76.73 |
Genes with Pfam domains | 2913 | 87.03% |
Genes with signal peptides | 239 | 7.14% |
Genes with transmembrane helices | 823 | 24.59% |
CRISPR repeats | 1 | 0 |