Table 4 Genome statistics of CS-508 (A) and MVCC14 (B)
Attribute | A Value | A % of Total | B Value | B % of Total |
|---|---|---|---|---|
Genome size (bp) | 3,558,956 | 100 | 3,594,524 | 100 |
DNA coding (bp) | 3,039,246 | 85.34 | 3,074,946 | 85.55 |
DNA G + C (bp) | 1,530,351 | 43 | 1,581,591 | 44 |
DNA scaffolds | 163 | 100 | 99 | 100 |
Total genes | 3344 | 100 | 3616 | 100 |
Protein coding genes | 3302 | 98.74 | 3560 | 98.45 |
RNA genes | 42 | 1.26 | 56 | 1.55 |
Pseudo genes | – | – | – | – |
Genes in internal clusters | – | – | – | – |
Genes with function prediction | 2247 | 67.19 | 2337 | 64.63 |
Genes assigned to COGs | 1747 | 56.16 | 1796 | 55.55 |
Genes with Pfam domains | 2656 | 79.43 | 2800 | 77.43 |
Genes with signal peptides | 71 | 2.12 | 63 | 1.74 |
Genes with transmembrane helices | 255 | 7.63 | 748 | 20.66 |
CRISPR repeats | 7 | – | 9 | – |