TY - JOUR AU - Tiwari, R. AU - Howieson, J. AU - Yates, R. AU - Tian, R. AU - Held, B. AU - Tapia, R. PY - 2015 DA - 2015// TI - Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos JO - Standards in genomic sciences VL - 10 UR - https://doi.org/10.1186/s40793-015-0115-9 DO - 10.1186/s40793-015-0115-9 ID - Tiwari2015 ER - TY - JOUR AU - Janczarek, M. AU - Rachwał, K. AU - Marzec, A. AU - Grządziel, J. AU - Palusińska-Szysz, M. PY - 2015 DA - 2015// TI - Signal molecules and cell-surface components involved in early stages of the legume–rhizobium interactions JO - Appl Soil Ecol VL - 85 UR - https://doi.org/10.1016/j.apsoil.2014.08.010 DO - 10.1016/j.apsoil.2014.08.010 ID - Janczarek2015 ER - TY - JOUR AU - Eshraghi, L. AU - De Meyer, S. E. AU - Tian, R. AU - Seshadri, R. AU - Ivanova, N. AU - Pati, A. PY - 2015 DA - 2015// TI - High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743-an effective microsymbiont of an Indigofera sp. growing in Australia JO - Standards in genomic sciences VL - 10 UR - https://doi.org/10.1186/s40793-015-0073-2 DO - 10.1186/s40793-015-0073-2 ID - Eshraghi2015 ER - TY - JOUR AU - Sulieman, S. AU - Tran, L. -. S. P. PY - 2014 DA - 2014// TI - Symbiotic nitrogen fixation in legume nodules: metabolism and regulatory mechanisms JO - Int J Mol Sci VL - 15 UR - https://doi.org/10.3390/ijms151119389 DO - 10.3390/ijms151119389 ID - Sulieman2014 ER - TY - JOUR AU - Murray, J. D. PY - 2011 DA - 2011// TI - Invasion by invitation: rhizobial infection in legumes JO - Mol Plant-Microbe Interact VL - 24 UR - https://doi.org/10.1094/MPMI-08-10-0181 DO - 10.1094/MPMI-08-10-0181 ID - Murray2011 ER - TY - JOUR AU - Wang, D. AU - Yang, S. AU - Tang, F. AU - Zhu, H. PY - 2012 DA - 2012// TI - Symbiosis specificity in the legume–rhizobial mutualism JO - Cell Microbiol VL - 14 UR - https://doi.org/10.1111/j.1462-5822.2011.01736.x DO - 10.1111/j.1462-5822.2011.01736.x ID - Wang2012 ER - TY - JOUR AU - Capela, D. AU - Barloy-Hubler, F. AU - Gouzy, J. AU - Bothe, G. AU - Ampe, F. AU - Batut, J. PY - 2001 DA - 2001// TI - Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021 JO - Proc Natl Acad Sci VL - 98 UR - https://doi.org/10.1073/pnas.161294398 DO - 10.1073/pnas.161294398 ID - Capela2001 ER - TY - JOUR AU - Wei, G. AU - Chen, W. AU - Zhu, W. AU - Chen, C. AU - Young, J. P. W. AU - Bontemps, C. PY - 2009 DA - 2009// TI - Invasive Robinia pseudoacacia in China is nodulated by Mesorhizobium and Sinorhizobium species that share similar nodulation genes with native American symbionts JO - FEMS Microbiol Ecol VL - 68 UR - https://doi.org/10.1111/j.1574-6941.2009.00673.x DO - 10.1111/j.1574-6941.2009.00673.x ID - Wei2009 ER - TY - JOUR AU - Xie, P. AU - Hao, X. AU - Herzberg, M. AU - Luo, Y. AU - Nies, D. H. AU - Wei, G. PY - 2015 DA - 2015// TI - Genomic analyses of metal resistance genes in three plant growth promoting bacteria of legume plants in northwest mine tailings, China JO - J Environ Sci VL - 27 UR - https://doi.org/10.1016/j.jes.2014.07.017 DO - 10.1016/j.jes.2014.07.017 ID - Xie2015 ER - TY - JOUR AU - Hao, X. AU - Lin, Y. AU - Johnstone, L. AU - Baltrus, D. A. AU - Miller, S. J. AU - Wei, G. PY - 2012 DA - 2012// TI - Draft genome sequence of plant growth-promoting rhizobium Mesorhizobium amorphae, isolated from zinc-lead mine tailings JO - J Bacteriol VL - 194 UR - https://doi.org/10.1128/JB.06475-11 DO - 10.1128/JB.06475-11 ID - Hao2012 ER - TY - JOUR AU - Mohamad, O. A. AU - Hao, X. AU - Xie, P. AU - Hatab, S. AU - Lin, Y. AU - Wei, G. PY - 2012 DA - 2012// TI - Biosorption of copper (II) from aqueous solution using non-living Mesorhizobium amorphae strain CCNWGS0123 JO - Microbes Environ VL - 27 UR - https://doi.org/10.1264/jsme2.ME11331 DO - 10.1264/jsme2.ME11331 ID - Mohamad2012 ER - TY - JOUR AU - Xie, P. AU - Hao, X. AU - Mohamad, O. A. AU - Liang, J. AU - Wei, G. PY - 2013 DA - 2013// TI - Comparative study of chromium biosorption by Mesorhizobium amorphae strain CCNWGS0123 in single and binary mixtures JO - Appl Biochem Biotechnol VL - 169 UR - https://doi.org/10.1007/s12010-012-9976-1 DO - 10.1007/s12010-012-9976-1 ID - Xie2013 ER - TY - JOUR AU - Chen, H. AU - Chou, M. AU - Wang, X. AU - Liu, S. AU - Zhang, F. AU - Wei, G. PY - 2013 DA - 2013// TI - Profiling of differentially expressed genes in roots of Robinia pseudoacacia during nodule development using suppressive subtractive hybridization JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0063930 DO - 10.1371/journal.pone.0063930 ID - Chen2013 ER - TY - JOUR AU - Wang, E. AU - Van Berkum, P. AU - Sui, X. AU - Beyene, D. AU - Chen, W. PY - 1999 DA - 1999// TI - Martínez-Romero E. Diversity of rhizobia associated with Amorpha fruticosa isolated from Chinese soils and description of Mesorhizobium amorphae sp. nov JO - Int J Syst Evol Microbiol VL - 49 ID - Wang1999 ER - TY - JOUR AU - Tamura, K. AU - Stecher, G. AU - Peterson, D. AU - Filipski, A. AU - Kumar, S. PY - 2013 DA - 2013// TI - MEGA6: molecular evolutionary genetics analysis version 6.0 JO - Mol Biol Evol VL - 30 UR - https://doi.org/10.1093/molbev/mst197 DO - 10.1093/molbev/mst197 ID - Tamura2013 ER - TY - JOUR AU - Tamura, K. AU - Nei, M. PY - 1993 DA - 1993// TI - Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees JO - Mol Biol Evol VL - 10 ID - Tamura1993 ER - TY - JOUR AU - Felsenstein, J. o. s. e. p. h. PY - 1985 DA - 1985// TI - Confidence Limits on Phylogenies: An Approach Using the Bootstrap JO - Evolution VL - 39 UR - https://doi.org/10.1111/j.1558-5646.1985.tb00420.x DO - 10.1111/j.1558-5646.1985.tb00420.x ID - Felsenstein1985 ER - TY - JOUR AU - Wang, S. AU - Hao, B. AU - Li, J. AU - Gu, H. AU - Peng, J. AU - Xie, F. PY - 2014 DA - 2014// TI - Whole-genome sequencing of Mesorhizobium huakuii 7653R provides molecular insights into host specificity and symbiosis island dynamics JO - BMC Genomics VL - 15 UR - https://doi.org/10.1186/1471-2164-15-1 DO - 10.1186/1471-2164-15-1 ID - Wang2014 ER - TY - JOUR AU - Besemer, J. AU - Lomsadze, A. AU - Borodovsky, M. PY - 2001 DA - 2001// TI - GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions JO - Nucleic Acids Res VL - 29 UR - https://doi.org/10.1093/nar/29.12.2607 DO - 10.1093/nar/29.12.2607 ID - Besemer2001 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. AU - Kawashima, S. AU - Okuno, Y. AU - Hattori, M. PY - 2004 DA - 2004// TI - The KEGG resource for deciphering the genome JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh063 DO - 10.1093/nar/gkh063 ID - Kanehisa2004 ER - TY - JOUR AU - Kanehisa, M. PY - 1997 DA - 1997// TI - A database for post-genome analysis JO - Trends Genet VL - 13 UR - https://doi.org/10.1016/S0168-9525(97)01223-7 DO - 10.1016/S0168-9525(97)01223-7 ID - Kanehisa1997 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. AU - Hattori, M. AU - Aoki-Kinoshita, K. F. AU - Itoh, M. AU - Kawashima, S. PY - 2006 DA - 2006// TI - From genomics to chemical genomics: new developments in KEGG JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj102 DO - 10.1093/nar/gkj102 ID - Kanehisa2006 ER - TY - JOUR AU - Tatusov, R. L. AU - Koonin, E. V. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - A genomic perspective on protein families JO - Science VL - 278 UR - https://doi.org/10.1126/science.278.5338.631 DO - 10.1126/science.278.5338.631 ID - Tatusov1997 ER - TY - JOUR AU - Tatusov, R. L. AU - Fedorova, N. D. AU - Jackson, J. D. AU - Jacobs, A. R. AU - Kiryutin, B. AU - Koonin, E. V. PY - 2003 DA - 2003// TI - The COG database: an updated version includes eukaryotes JO - BMC bioinformatics VL - 4 UR - https://doi.org/10.1186/1471-2105-4-41 DO - 10.1186/1471-2105-4-41 ID - Tatusov2003 ER - TY - JOUR AU - Magrane, M. AU - Consortium, U. PY - 2011 DA - 2011// TI - UniProt Knowledgebase: a hub of integrated protein data JO - Database VL - 2011 UR - https://doi.org/10.1093/database/bar009 DO - 10.1093/database/bar009 ID - Magrane2011 ER - TY - JOUR AU - Ashburner, M. AU - Ball, C. A. AU - Blake, J. A. AU - Botstein, D. AU - Butler, H. AU - Cherry, J. M. PY - 2000 DA - 2000// TI - Gene ontology: tool for the unification of biology JO - Nat Genet VL - 25 UR - https://doi.org/10.1038/75556 DO - 10.1038/75556 ID - Ashburner2000 ER - TY - JOUR AU - Lowe, T. M. AU - Eddy, S. R. PY - 1997 DA - 1997// TI - tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.5.0955 DO - 10.1093/nar/25.5.0955 ID - Lowe1997 ER - TY - JOUR AU - Lagesen, K. AU - Hallin, P. AU - Rødland, E. A. AU - Stærfeldt, H. -. H. AU - Rognes, T. AU - Ussery, D. W. PY - 2007 DA - 2007// TI - RNAmmer: consistent and rapid annotation of ribosomal RNA genes JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm160 DO - 10.1093/nar/gkm160 ID - Lagesen2007 ER - TY - JOUR AU - Gardner, P. P. AU - Daub, J. AU - Tate, J. G. AU - Nawrocki, E. P. AU - Kolbe, D. L. AU - Lindgreen, S. PY - 2009 DA - 2009// TI - Rfam: updates to the RNA families database JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkn766 DO - 10.1093/nar/gkn766 ID - Gardner2009 ER - TY - STD TI - Zhou Y, Liang Y, Lynch KH, Dennis JJ, Wishart DS. PHAST: a fast phage search tool. Nucleic acids Res. 2011:gkr485. ID - ref31 ER - TY - JOUR AU - Grissa, I. AU - Vergnaud, G. AU - Pourcel, C. PY - 2007 DA - 2007// TI - CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm360 DO - 10.1093/nar/gkm360 ID - Grissa2007 ER - TY - JOUR AU - Trevisan, V. PY - 1885 DA - 1885// TI - Caratteri di alcuni nuovi generi di Batteriacee. Atti della Accademia Fisio-Medico-Statistica in Milano JO - Series VL - 4 ID - Trevisan1885 ER - TY - JOUR AU - VBD, S. AU - McGowan, V. AU - PHA, S. PY - 1980 DA - 1980// TI - Approved lists of bacterial names JO - Int J Syst Evol Microbiol VL - 30 UR - https://doi.org/10.1099/00207713-30-1-225 DO - 10.1099/00207713-30-1-225 ID - VBD1980 ER - TY - JOUR AU - Megias, M. AU - Folch, J. L. AU - Sousa, C. PY - 1993 DA - 1993// TI - Control of the expression of bacterial genes involved in symbiotic nitrogen-fixation JO - World J Microbiol Biotechnol VL - 9 UR - https://doi.org/10.1007/BF00328032 DO - 10.1007/BF00328032 ID - Megias1993 ER - TY - JOUR AU - Masson-Boivin, C. AU - Giraud, E. AU - Perret, X. AU - Batut, J. PY - 2009 DA - 2009// TI - Establishing nitrogen-fixing symbiosis with legumes: how many rhizobium recipes? JO - Trends Microbiol VL - 17 UR - https://doi.org/10.1016/j.tim.2009.07.004 DO - 10.1016/j.tim.2009.07.004 ID - Masson-Boivin2009 ER - TY - JOUR AU - Moulin, L. AU - Munive, A. AU - Dreyfus, B. AU - Boivin-Masson, C. PY - 2001 DA - 2001// TI - Nodulation of legumes by members of the β-subclass of Proteobacteria JO - Nature VL - 411 UR - https://doi.org/10.1038/35082070 DO - 10.1038/35082070 ID - Moulin2001 ER - TY - JOUR AU - Giraud, E. AU - Moulin, L. AU - Vallenet, D. AU - Barbe, V. AU - Cytryn, E. AU - Avarre, J. -. C. PY - 2007 DA - 2007// TI - Legumes symbioses: absence of nod genes in photosynthetic bradyrhizobia JO - Science VL - 316 UR - https://doi.org/10.1126/science.1139548 DO - 10.1126/science.1139548 ID - Giraud2007 ER - TY - JOUR AU - Berrada, H. AU - Fikri-Benbrahim, K. PY - 2014 DA - 2014// TI - Taxonomy of the rhizobia: current perspectives JO - Br Microbiol Res J VL - 4 UR - https://doi.org/10.9734/BMRJ/2014/5635 DO - 10.9734/BMRJ/2014/5635 ID - Berrada2014 ER - TY - STD TI - Garrity G M, Bell J A, Phylum L T: XIV. Proteobacteria phyl nov. Bergey’s Manual of Systematic Bacteriology, 2: 1. ID - ref40 ER - TY - CHAP AU - Garrity, G. M. AU - Bell, J. A. AU - Lilburn, T. PY - 2005 DA - 2005// TI - Class I. Alphaproteobacteria class BT - Bergey's Manual of Systematic Bacteriology PB - Springer-Verlag CY - New York ID - Garrity2005 ER - TY - JOUR AU - Garrity, A. PY - 2006 DA - 2006// TI - List of new names and new combinations previously effectively, but not validly, published JO - Gen VL - 56 ID - Garrity2006 ER - TY - CHAP AU - Kuykendall, L. D. PY - 2005 DA - 2005// TI - Order VI. Rhizobiales ord. nov BT - Bergey's Manual of Systematic Bacteriology PB - Springer-Verlag CY - New York ID - Kuykendall2005 ER - TY - JOUR AU - Novikova, N. I. PY - 1996 DA - 1996// TI - Modern concepts of the phylogeny and taxonomy of nodule bacteria JO - Microbiology VL - 65 ID - Novikova1996 ER - TY - JOUR AU - Jarvis, B. D. W. AU - Van Berkum, P. AU - Chen, W. X. PY - 1997 DA - 1997// TI - Transfer of Rhizobium loti, Rhizobium huakuii, Rhizobium ciceri, Rhizobium mediterraneum, and Rhizobium tianshanense to Mesorhizobium gen. nov JO - Int J Syst Evol Microbiol VL - 47 ID - Jarvis1997 ER -