Table 5 Number of genes associated with general COG functional categories of the genome of “T. syntrophicum” sp. nov. strain Cad16T. The percentage is set relative to the total number of protein coding genes in the genome
Code | Value | % age | Description |
|---|---|---|---|
J | 210 | 3.37 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.02 | RNA processing and modification |
K | 144 | 2.31 | Transcription |
L | 276 | 4.43 | Replication, recombination and repair |
B | 0 | 0.00 | Chromatin structure and dynamics |
D | 42 | 0.67 | Cell cycle control, Cell division, chromosome partitioning |
Y | 0 | 0.00 | Nuclear structure |
V | 186 | 2.98 | Defense mechanisms |
T | 297 | 4.76 | Signal transduction mechanisms |
M | 274 | 4.39 | Cell wall/membrane biogenesis |
N | 10 | 0.16 | Cell motility |
Z | 0 | 0.00 | Cytoskeleton |
W | 0 | 0.00 | Extracellular Structures |
U | 62 | 0.99 | Intracellular trafficking and secretion |
O | 226 | 3.62 | Posttranslational modification, protein turnover, chaperones |
X | 97 | 1.56 | Energy production and conversion |
C | 245 | 3.93 | Energy production and conversion |
G | 122 | 1.96 | Carbohydrate transport and metabolism |
E | 167 | 2.68 | Amino acid transport and metabolism |
F | 49 | 0.79 | Nucleotide transport and metabolism |
H | 135 | 2.16 | Coenzyme transport and metabolism |
I | 93 | 1.49 | Lipid transport and metabolism |
P | 184 | 2.95 | Inorganic ion transport and metabolism |
Q | 29 | 0.46 | Secondary metabolites biosynthesis, transport and catabolism |
R | 308 | 4.94 | General function prediction only |
S | 1522 | 24.40 | Function unknown |
No COG | 1543 | 24.74 | Not in COGs |
Multi COG | 320 | 5.13 | Multiple COG assignments |