Table 4 Number of genes associated with general COG functional categories
Codea | Strain PS6T | Strain 723 | Description | ||
|---|---|---|---|---|---|
Valueb | %age | Valueb | %age | ||
J | 101 | 10.32 | 101 | 10.58 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.00 | 0 | 0.00 | RNA processing and modification |
K | 21 | 2.15 | 20 | 2.09 | Transcription |
L | 66 | 6.74 | 60 | 6.28 | Replication, recombination and repair |
B | 0 | 0.00 | 0 | 0.00 | Chromatin structure and dynamics |
D | 4 | 0.41 | 5 | 0.52 | Cell cycle control, Cell division, chromosome partitioning |
V | 33 | 3.37 | 29 | 3.04 | Defense mechanisms |
T | 5 | 0.51 | 5 | 0.52 | Signal transduction mechanisms |
M | 10 | 1.02 | 10 | 1.05 | Cell wall/membrane biogenesis |
N | 0 | 0.00 | 0 | 0.00 | Cell motility |
U | 11 | 1.12 | 9 | 0.94 | Intracellular trafficking and secretion |
O | 28 | 2.86 | 31 | 3.25 | Posttranslational modification, protein turnover, chaperones |
C | 34 | 3.47 | 34 | 3.56 | Energy production and conversion |
G | 72 | 7.35 | 74 | 7.75 | Carbohydrate transport and metabolism |
E | 27 | 2.76 | 26 | 2.72 | Amino acid transport and metabolism |
F | 25 | 2.55 | 25 | 2.62 | Nucleotide transport and metabolism |
H | 13 | 1.33 | 13 | 1.36 | Coenzyme transport and metabolism |
I | 9 | 0.92 | 9 | 0.94 | Lipid transport and metabolism |
P | 35 | 3.58 | 36 | 3.77 | Inorganic ion transport and metabolism |
Q | 1 | 0.10 | 1 | 0.10 | Secondary metabolites biosynthesis, transport and catabolism |
R | 0 | 0.00 | 0 | 0.00 | General function prediction only |
S | 92 | 9.40 | 93 | 9.74 | Function unknown |
– | 398 | 40.65 | 378 | 39.58 | Not in COGs |