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Table 3 Genome statistics

From: High quality draft genome sequences of Mycoplasma agassizii strains PS6T and 723 isolated from Gopherus tortoises with upper respiratory tract disease

Attribute

Strain PS6T

Strain 723

Value

% of Total

Value

% of Total

Genome size (bp)

1,274,972

100.00

1,211,209

100.00

DNA coding (bp)

1124,547a

88.20c

1072,218a

88.52c

DNA G + C (bp)

362,520

28.43c

343,241

28.34c

DNA scaffolds

8

100.00

40

100.00

Total genes

1027

100.00

997

100.00

Protein coding genes

979

95.33d

955

95.79d

RNA genes

35

3.41d

35

3.51d

Pseudo genes

13

1.27d

7

0.70d

Genes in internal clusters

Genes with function prediction

467b

47.70e

301b

31.52e

Genes assigned to COGs

581

59.35e

577

60.42e

Genes with Pfam domains

608

62.10e

607

63.56e

Genes with signal peptides

160

16.34e

150

15.71e

Genes with transmembrane helices

294

30.03e

288

30.16e

CRISPR repeats

0

0

  1. aProtein-coding sequences, not including stop codons
  2. bProteins not annotated as “hypothetical protein” by PGAP
  3. cRelative to genome size
  4. dRelative to total number of genes
  5. eRelative to protein-coding genes