Table 3 Genome statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 5,168,928 | 100.00% |
DNA coding (bp) | 4,513,533 | 87.32% |
DNA G + C (bp) | 3,126,125 | 60.48% |
DNA scaffolds | 16 | 100.00% |
Total genes | 4693 | 100.00% |
Protein coding genes | 4575 | 97.49% |
RNA genes | 118 | 2.51% |
Pseudo genesa | 600 | 12.78% |
Genes in internal clusters | 805 | 17.15% |
Genes with function prediction | 2988 | 63.67% |
Genes assigned to COGs | 2559 | 54.53% |
Genes with Pfam domains | 3160 | 67.33% |
Genes with signal peptides | 435 | 9.27% |
Genes with transmembrane helices | 908 | 19.35% |
CRISPR repeats | 0 | 0.00% |