Table 3 Genome statistics
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 4,106,736 | 100.00 |
DNA coding (bp) | 3,712,645 | 90.40 |
DNA G + C (bp) | 2,208,074 | 53.77 |
DNA scaffolds | 227 | 100.00 |
Total genes | 4166 | 100.00 |
Protein coding genes | 4128 | 99.09 |
RNA genes | 38 | 0.91 |
Pseudo genes | 0 | 0 |
Genes in internal clusters | 975 | 23.40 |
Genes with function prediction | 3252 | 78.06 |
Genes assigned to COGs | 2877 | 69.06 |
Genes with Pfam domains | 3425 | 82.21 |
Genes with signal peptides | 349 | 8.38 |
Genes with transmembrane helices | 871 | 20.91 |
CRISPR repeats | 0 | 0 |