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Table 4 Number of genes associated with the 25 general COG functional categories

From: Draft genome sequence of Fermentimonas caenicola strain SIT8, isolated from the human gut

Code Strain SIT8 Strain ING2-E5BT Description
Value % of total Value % of total
J 133 5.65 135 5.61 Translation
A 0 0 0 0 RNA processing and modification
K 85 3.61 83 3.45 Transcription
L 90 3.82 130 5.41 Replication, recombination and repair
B 0 0 0 0 Chromatin structure and dynamics
D 20 0.85 21 0.87 Cell cycle control, mitosis and meiosis
Y 0 0 0 0 Nuclear structure
V 29 1.23 29 1.21 Defense mechanisms
T 45 1.91 40 1.66 Signal transduction mechanisms
M 146 6.20 125 5.20 Cell wall/membrane biogenesis
N 2 0.09 2 0.08 Cell motility
Z 0 0 0 0 Cytoskeleton
W 0 0 0 0 Extracellular structures
U 17 0.72 17 0.70 Intracellular trafficking and secretion
O 69 2.93 69 2.87 Posttranslational modification, protein turnover, chaperones
C 123 5.23 121 5.03 Energy production and conversion
G 142 6.03 143 5.95 Carbohydrate transport and metabolism
E 144 6.12 143 5.95 Amino acid transport and metabolism
F 54 2.29 55 2.29 Nucleotide transport and metabolism
H 77 3.27 76 3.16 Coenzyme transport and metabolism
I 57 2.42 58 2.41 Lipid transport and metabolism
P 118 5.01 106 4.41 Inorganic ion transport and metabolism
Q 11 0.47 13 0.54 Secondary metabolites biosynthesis, transport and catabolism
R 216 9.18 213 8.86 General function prediction only
S 115 4.89 126 5.24 Function unknown
661 28.08 700 29.1 Not in COGs
  1. COGs Clusters of Orthologous Groups database