Table 4 Number of genes associated with the 25 general COG functional categories
From: Draft genome sequence of Fermentimonas caenicola strain SIT8, isolated from the human gut
Code | Strain SIT8 | Strain ING2-E5BT | Description | ||
|---|---|---|---|---|---|
Value | % of total | Value | % of total | ||
J | 133 | 5.65 | 135 | 5.61 | Translation |
A | 0 | 0 | 0 | 0 | RNA processing and modification |
K | 85 | 3.61 | 83 | 3.45 | Transcription |
L | 90 | 3.82 | 130 | 5.41 | Replication, recombination and repair |
B | 0 | 0 | 0 | 0 | Chromatin structure and dynamics |
D | 20 | 0.85 | 21 | 0.87 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0 | 0 | 0 | Nuclear structure |
V | 29 | 1.23 | 29 | 1.21 | Defense mechanisms |
T | 45 | 1.91 | 40 | 1.66 | Signal transduction mechanisms |
M | 146 | 6.20 | 125 | 5.20 | Cell wall/membrane biogenesis |
N | 2 | 0.09 | 2 | 0.08 | Cell motility |
Z | 0 | 0 | 0 | 0 | Cytoskeleton |
W | 0 | 0 | 0 | 0 | Extracellular structures |
U | 17 | 0.72 | 17 | 0.70 | Intracellular trafficking and secretion |
O | 69 | 2.93 | 69 | 2.87 | Posttranslational modification, protein turnover, chaperones |
C | 123 | 5.23 | 121 | 5.03 | Energy production and conversion |
G | 142 | 6.03 | 143 | 5.95 | Carbohydrate transport and metabolism |
E | 144 | 6.12 | 143 | 5.95 | Amino acid transport and metabolism |
F | 54 | 2.29 | 55 | 2.29 | Nucleotide transport and metabolism |
H | 77 | 3.27 | 76 | 3.16 | Coenzyme transport and metabolism |
I | 57 | 2.42 | 58 | 2.41 | Lipid transport and metabolism |
P | 118 | 5.01 | 106 | 4.41 | Inorganic ion transport and metabolism |
Q | 11 | 0.47 | 13 | 0.54 | Secondary metabolites biosynthesis, transport and catabolism |
R | 216 | 9.18 | 213 | 8.86 | General function prediction only |
S | 115 | 4.89 | 126 | 5.24 | Function unknown |
– | 661 | 28.08 | 700 | 29.1 | Not in COGs |