Table 4 Genome statistics
From: Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 4,980,322 | 100.00 |
DNA coding (bp) | 4,314,063 | 86.62 |
DNA G + C (bp) | 2,580,564 | 51.85 |
DNA scaffolds | 2 | |
Total genes | 4451 | 100.00 |
Protein coding genes | 4349 | 97.71 |
RNA genes | 102 | 2.29 |
Pseudo genes | NA | NA |
Genes in internal clusters | NA | NA |
Genes with function prediction | 3955 | 88.86 |
Genes assigned to COGs | 3812 | 85.64 |
Genes with Pfam domains | 3782 | 84.97 |
Genes with signal peptides | 428 | 9.62 |
Genes with transmembrane helices | 939 | 21.10 |
CRISPR repeats | 5 |