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Table 5 Delftia phage RG-2014 gene prediction

From: Complete genome sequence of lytic bacteriophage RG-2014 that infects the multidrug resistant bacterium Delftia tsuruhatensis ARB-1

Gene

Strand

Number of codons

Predicted function

Organism with best match

N4 genea

Gene accession no.

% Idb

E-valueb

1

+

101

Conserved hypothetical protein

Erwinia phage Ea9–2

AIU44254

32

0.002

2

+

139

Conserved hypothetical protein

Achromobacter phage JWdelta

2

AHC56518

36

2e-21

3

+

121

Hypothetical protein

4

+

122

Conserved hypothetical protein

Roseovarius sp. phage 1

14

CBW47037

57

3e-45

5

+

109

Hypothetical protein

6

+

115

Hypothetical protein

7

104

Hypothetical protein

8

+

105

Hypothetical protein

9

+

50

Hypothetical protein

10

+

69

Hypothetical protein

11

+

186

Conserved Hypothetical protein

Pithovirus sibericum

YP 009001006

32

3e-22

12

+

285

Conserved hypothetical protein

Achromobacter sp.

CYTR01000018

38

2e-26

13

+

108

Conserved hypothetical protein

Escherichia phage phAPEC8

3

YP_007348409

29

3e-04

14

+

137

Hypothetical protein

15

+

89

Hypothetical protein

16

+

44

Hypothetical protein

17

+

77

Hypothetical protein

18

+

142

Conserved hypothetical protein

Achromobacter phage øAxp-3

YP_009148381

55

3e-37

19

+

193

Hypothetical protein

20

+

76

Conserved hypothetical protein

Pseudomonas phage PPpw-3c

YP_008873216

40

5e-09

21

+

217

Hypothetical protein

22

+

272

RNA polymerase I subunit

Erwinia vB EamP Rexella

15

ANJ65251

54

1e-102

23

+

432

RNA polymerase II subunit

Erwinia phage Ea9–2

16

AAL71577

47

1e-135

24

+

181

Virion decoration protein

Achromobacter phage øAxp-3

17

YP_009208670

36

1e-10

25

+

157

Hypothetical protein

26

+

155

Hypothetical protein

27

+

122

Hypothetical protein

28

+

82

Hypothetical protein

29

+

80

Hypothetical protein

30

+

115

Hypothetical protein

31

+

242

Hypothetical protein

32

+

209

Hypothetical protein

33

+

359

Conserved hypothetical protein

Erwinia phage Ea9–2

24

AHI60096

46

7e-104

34

+

127

Conserved hypothetical protein

Achromobacter phage øAxp-3

YP009208682

41

7e-11

35

+

92

Hypothetical protein

36

+

405

Conserved hypothetical protein

Escherichia phage N4

25

ABK54394

39

1e-86

37

+

170

dCTP deaminase

Escherichia phage Bp4

26

AHN83412

51

4e-53

38

+

78

Hypothetical protein

39

+

124

Hypothetical protein

40

+

140

Hypothetical protein

41

+

169

Hypothetical protein

42

+

121

Hypothetical protein

43

+

103

Hypothetical protein

44

+

73

Hypothetical protein

45

+

317

Thymidylate synthase

Salmonella phage SEGD1c

KU726251

48

2e-101

46

+

104

Conserved hypothetical protein

Escherichia phage N4

35

YP_950513

59

1e-36

47

+

135

Conserved hypothetical protein

Paenibacillus phage PG1c

YP_008129928

66

5E-54

48

+

197

Nucleotide pyrophospho-hydrolase

Pseudomonas phage PaMx74c

YP_009199508

33

3e-13

49

+

436

DNA helicase

Achromobacter phage JWdelta

37

AHC56567

48

4e-137

50

+

172

Conserved hypothetical protein

Achromobacter phage JWalpha

38

YP_009004756

34

2e-27

51

+

884

DNA polymerase

Escherichia phage N4

39

ABK54408

60

0.0

52

+

127

Hypothetical protein

53

+

286

Conserved Hypothetical protein

Nitrincola phage 1 M3–16

YP 009037286

47

1e-12

54

+

327

Conserved hypothetical protein

Escherichia phage G7C

41

AEL79653

45

7e-97

55

+

724

DNA primase

Achromobacter phage øAxp-3

42

ALA45517

62

0.0

56

+

249

Conserved hypothetical protein

Escherichia phage N4

43

ABK54413

57

3e-100

57

+

253

Single-stranded DNA-binding protein

Erwinia phage S6

44

AEJ81593

38

5e-37

58

+

372

Conserved hypothetical protein

Salmonella phage FSL_SP-076

YP_008240188

434

4e-24

59

+

61

Hypothetical protein

60

+

65

Hypothetical protein

61

+

235

Hypothetical protein

62

+

102

Hypothetical protein

63

+

59

Hypothetical protein

64

+

98

Conserved Hypothetical protein

Bacillus phage SP-10

YP 007003301

40

3e-10

65

+

288

Possible transcriptional regulator

Burkholderia phage AH2c

 

AEY69538

38

5e-44

66

+

110

Hypothetical protein

67

+

172

Hypothetical protein

Deftia phage øW-143

YP_003359016

39e

1e-10

68

3413

Virion RNA polymerase

Achromobacter phage øAxp-3

50

ALA45523

42

0.0

69

712

Lysozyme-like domain virion structural protein

Escherichia phage ECBP1

51

AFR52010

25

5e-18

70

135

Conserved hypothetical protein

Achromobacter phage JWdelta

AHC56583

75

2e-38

71

921

Conserved hypothetical protein

Achromobacter phage øAxp-3

53

ALA45526

36

1e-168

72

300

Virion structural protein

Escherichia phage N4

54

AAO24827

50

2e-101

73

265

Conserved hypothetical protein

Achromobacter phage øAxp-3

55

ALA45528

38

3e-47

74

411

Major capsid protein

Achromobacter phage øAxp-3

56

ALA45529

66

0.0

75

281

Conserved hypothetical protein

Escherichia phage IME11

57

AFV29058

38d

7e-42

76

116

Hypothetical protein

Erwinia phage S6

58

YP_007005822

71e

0.006

77

138

Conserved Hypothetical protein

Roseovarius sp. 217 phage 1

CBW47064

28

0.002

78

766

Portal protein

Erwinia phage Frozen

59

ANJ65209

59

0.0

79

170

Lysis / possible Rz-like spanin

Achromobacter phage JWalpha

60

AHC94031

40

4e-21

80

201

Lysis / N-acetylmuramidase

Escherichia phage G7C

61

AEL79672

52

7e-71

81

108

Conserved hypothetical protein

Escherichia phage N4

63

ABK54424

34

1e-17

82

416

Conserved hypothetical protein

Achromobacter phage øAxp-3

64

ALA45537

64

0.0

83

1388

Tail sheath and receptor binding virion protein

Achromobacter phage øAxp-3

65

ALA45538

51

0.0

84

140

Hypothetical protein

85

234

Possible virion appendage protein

Erwinia phage Ea9–2

66

AHI60147

44d

2e-67

86

536

Large terminase subunit

Escherichia phage ECBP1

68

AFR52033

61

0.0

87

228

Conserved hypothetical protein

Escherichia phage N4

69

ABK54430

46

2e-61

88

340

Conserved hypothetical protein

Achromobacter phage øAxp-3

49

ALA45543

34

1e-17

  1. a E. coli phage N4 is the best characterized and therefore the prototypical member of this phage group
  2. b% identity and e-value determined by BLASTp at NCBI web site; unless otherwise noted, values are listed if the patch of similarity includes ≥60% of the protein
  3. cAll phages in this column are in the N4-like group except AH2, øW-14, SEGD1, PG1, PaMx74 and PPpw-3
  4. dSequence similarity only in N-terminal region
  5. eSequence similarity only in C-terminal region