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Table 4 Number of genes associated with the 25 general COG functional categories

From: Complete genome sequence of lytic bacteriophage RG-2014 that infects the multidrug resistant bacterium Delftia tsuruhatensis ARB-1

Code

Value

% agea

Description

J

0

0

Translation

A

0

0

RNA processing and modification

K

2

2.27

Transcription

L

2

2.27

Replication, recombination and repair

B

0

0

Chromatin structure and dynamics

D

0

0

Cell cycle control, mitosis and meiosis

Y

0

0

Nuclear structure

V

0

0

Defense mechanisms

T

0

0

Signal transduction mechanisms

M

1

1.14

Cell wall/membrane biogenesis

N

1

1.14

Cell motility

Z

0

0

Cytoskeleton

W

0

0

Extracellular structures

U

0

0

Intracellular trafficking and secretion

O

0

0

Posttranslational modification, protein turnover, chaperones

C

0

0

Energy production and conversion

G

0

0

Carbohydrate transport and metabolism

E

0

0

Amino acid transport and metabolism

F

2

2.27

Nucleotide transport and metabolism

H

0

0

Coenzyme transport and metabolism

I

0

0

Lipid transport and metabolism

P

0

0

Inorganic ion transport and metabolism

Q

0

0

Secondary metabolites biosynthesis, transport and catabolism

R

2

2.27

General function prediction only

S

1

1.14

Function unknown

77

87.5

Not in COGs

  1. aThe total is based on the total number of protein coding genes in the annotated genome