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Table 8 Comparison of MB2003, JK615T and B316T protein coding gene percentages to COG functional categories

From: The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003

Code

% of totala

Description

MB2003

JK615T

B316T

J

9.52

9.33

8.96

Translation

A

   

RNA processing and modification

K

7.31

7.59

7.30

Transcription

L

4.32

4.59

4.63

Replication, recombination and repair

B

   

Chromatin structure and dynamics

D

1.57

1.60

1.44

Cell cycle control, mitosis and meiosis

V

3.19

2.90

3.19

Defense mechanisms

T

6.82

6.72

7.47

Signal transduction mechanisms

M

7.61

7.45

8.52

Cell wall/membrane biogenesis

N

2.99

3.29

2.75

Cell motility

U

1.08

1.26

1.14

Intracellular trafficking and secretion

O

3.83

3.63

3.89

Posttranslational modification, protein turnover, chaperones

C

3.39

3.63

3.72

Energy production and conversion

G

11.93

11.99

12.15

Carbohydrate transport and metabolism

E

8.69

8.85

7.91

Amino acid transport and metabolism

F

3.93

3.82

3.98

Nucleotide transport and metabolism

H

3.88

3.77

3.23

Coenzyme transport and metabolism

I

3.53

3.19

2.80

Lipid transport and metabolism

P

3.88

4.06

2.75

Inorganic ion transport and metabolism

Q

0.79

0.68

0.79

Secondary metabolites biosynthesis, transport and catabolism

R

7.76

6.91

7.43

General function prediction only

S

3.58

3.53

4.11

Function unknown

–

40.33

39.83

46.51

Not in COGs

  1. aThe percentage is based on the total number of protein coding genes in the genome