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Table 4 Number of genes associated with general COG functional categories

From: Draft genome sequences of Bradyrhizobium shewense sp. nov. ERR11T and Bradyrhizobium yuanmingense CCBAU 10071T

Code ERR11T CCBAU 10071T Description
Value %age Value %age
J 225 3.65% 231 4.08% Translation, ribosomal structure and biogenesis
A 0 00% 0 00% RNA processing and modification
K 458 7.44% 392 6.93% Transcription
L 135 2.19% 143 2.53% Replication, recombination and repair
B 2 0.03% 2 0.04% Chromatin structure and dynamics
D 36 0.58% 39 0.69% Cell cycle control, Cell division, chromosome partitioning
V 162 2.63% 134 2.37% Defense mechanisms
T 288 4.68% 263 4.47% Signal transduction mechanisms
M 316 5.13% 300 5.3% Cell wall/membrane biogenesis
N 106 1.72% 109 1.93% Cell motility
U 85 1.38% 113 2% Intracellular trafficking and secretion
O 245 3.98% 221 3.9% Posttranslational modification, protein turnover, chaperones
C 440 7.15% 378 6.68% Energy production and conversion
G 438 7.11% 339 5.97% Carbohydrate transport and metabolism
E 665 10.8% 623 11.01% Amino acid transport and metabolism
F 98 1.59% 94 1.66% Nucleotide transport and metabolism
H 309 5.02% 271 4.79% Coenzyme transport and metabolism
I 413 6.71% 398 7.03% Lipid transport and metabolism
P 358 5.81% 311 5.49% Inorganic ion transport and metabolism
Q 266 4.32% 278 4.91% Secondary metabolites biosynthesis, transport and catabolism
R 684 11.11% 626 11.06% General function prediction only
S 353 5.73% 333 5.83% Function unknown
3288 38.08% 2948 37.5% Not in COGs
  1. The total is based on the total number of protein coding genes in the genome