Table 3 Genome statistics
Attribute | ERR11T | CCBAU 10071T | ||
|---|---|---|---|---|
Value | % of Total | Value | % of Total | |
Genome size (bp) | 9,163,226 | 100% | 8,201,522 | 100% |
DNA coding (bp) | 8548 | 99% | 6,928,453 | 84.48% |
DNA G + C (bp) | 5,792,812 | 63.22% | 5,230,108 | 63.77% |
DNA scaffolds | 102 | 100% | 108 | 100% |
Total genes | 8634 | 100% | 7861 | 100% |
Protein coding genes | 8548 | 99% | 7776 | 98.92% |
RNA genes | 86 | 1% | 85 | 1.08% |
Pseudo genes | not determined | Â | not determined | Â |
Genes in internal clusters | 1889 | 21.88% | 1457 | 18.53% |
Genes with function prediction | 6282 | 72.76% | 5703 | 72.55% |
Genes assigned to COGs | 5346 | 61.92% | 4913 | 62.50% |
Genes with Pfam domains | 6555 | 75.92% | 6014 | 76.50% |
Genes with signal peptides | 924 | 10.70% | 812 | 10.33% |
Genes with transmembrane helices | 1956 | 22.65% | 1772 | 22.54% |
CRISPR repeats | 3 | Â | 1 | Â |