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Table 11 Genome statistics

From: Genome overview of eight Candida boidinii strains isolated from human activities and wild environments

Attribute UNISS-Cb18 UNISS-Cb60 TOMC-Y13
Value % of Total Value % of Total Value % of Total
Genome size (bp) 18,791,961 100 18,794,311 100 18,987,836 100
DNA coding (bp) 9,828,418 52.3 9,838,412 52.35 9,664,304 50.9
DNA G + C (bp) 6,137,862 32.66 6,136,696 32.65 5,889,163 31.02
DNA scaffolds 279 100 235 100 860 100
Total genes 6112 100 6171 100 6343 100
Protein coding genes 5819 95.21 5827 94.43 5998 95.21
RNA genes 293 4.79 344 5.57 345 4.79
Pseudo genes
Genes in internal clusters
Genes with function prediction 3898 66.99 3908 67.07 3939 65.67
Genes assigned to COGs 4988 81.61 4991 80.88 5113 80.61
Genes with Pfam domains 4802 78.57 4802 77.82 4783 75.41
Genes with signal peptides 226 3.7 222 3.6 259 4.08
Genes with transm. helices 1094 17.9 1097 17.78 1041 16.41
CRISPR repeats 1 0.02 1 0.02 0 0
  TOMC-Y47 DBVPG6799 DBVPG7578
Value % of Total Value % of Total Value % of Total
Genome size (bp) 19,120,811 100 18,807,174 100 19,169,086 100
DNA coding (bp) 9,775,915 51.13 9,805,165 52.14 9,784,744 51.04
DNA G + C (bp) 5,915,475 30.94 6,150,837 32.7 5,934,349 30.96
DNA scaffolds 597 100 431 100 628 100
Total genes 6327 100 6169 100 6301 100
Protein coding genes 5932 95.21 5888 95.21 5963 95.21
RNA genes 395 4.79 281 4.79 338 4.79
Pseudo genes
Genes in internal clusters
Genes with function prediction 3927 66.2 3889 66.05 3939 66.06
Genes assigned to COGs 5120 80.92 4988 80.86 5136 81.51
Genes with Pfam domains 4803 75.91 4804 77.87 4818 76.46
Genes with signal peptides 259 4.09 226 3.66 262 4.16
Genes with transm. helices 1114 17.61 1095 17.75 1127 17.89
CRISPR repeats 3 0.05 3 0.05 9 0.14
  DBVPG8035 NDK27A1   
Value % of Total Value % of Total   
Genome size (bp) 19,138,300 100 18,791,129 100   
DNA coding (bp) 9,827,091 51.35 9,871,244 52.53   
DNA G + C (bp) 5,914,797 30.91 6,140,718 32.68   
DNA scaffolds 557 100 272 100   
Total genes 6253 100 6132 100   
Protein coding genes 5922 95.21 5835 95.21   
RNA genes 331 4.79 297 4.79   
Pseudo genes   
Genes in internal clusters   
Genes with function prediction 3893 65.74 3907 66.96   
Genes assigned to COGs 5108 81.69 4985 81.29   
Genes with Pfam domains 4804 76.83 4820 78.6   
Genes with signal peptides 256 4.09 226 3.69   
Genes with transmem. helices 1122 17.94 1109 18.09   
CRISPR repeats 2 0.03 3 0.05