Table 11 Genome statistics
Attribute | UNISS-Cb18 | UNISS-Cb60 | TOMC-Y13 | |||
Value | % of Total | Value | % of Total | Value | % of Total | |
Genome size (bp) | 18,791,961 | 100 | 18,794,311 | 100 | 18,987,836 | 100 |
DNA coding (bp) | 9,828,418 | 52.3 | 9,838,412 | 52.35 | 9,664,304 | 50.9 |
DNA G + C (bp) | 6,137,862 | 32.66 | 6,136,696 | 32.65 | 5,889,163 | 31.02 |
DNA scaffolds | 279 | 100 | 235 | 100 | 860 | 100 |
Total genes | 6112 | 100 | 6171 | 100 | 6343 | 100 |
Protein coding genes | 5819 | 95.21 | 5827 | 94.43 | 5998 | 95.21 |
RNA genes | 293 | 4.79 | 344 | 5.57 | 345 | 4.79 |
Pseudo genes | – | – | – | – | – | – |
Genes in internal clusters | – | – | – | – | – | – |
Genes with function prediction | 3898 | 66.99 | 3908 | 67.07 | 3939 | 65.67 |
Genes assigned to COGs | 4988 | 81.61 | 4991 | 80.88 | 5113 | 80.61 |
Genes with Pfam domains | 4802 | 78.57 | 4802 | 77.82 | 4783 | 75.41 |
Genes with signal peptides | 226 | 3.7 | 222 | 3.6 | 259 | 4.08 |
Genes with transm. helices | 1094 | 17.9 | 1097 | 17.78 | 1041 | 16.41 |
CRISPR repeats | 1 | 0.02 | 1 | 0.02 | 0 | 0 |
TOMC-Y47 | DBVPG6799 | DBVPG7578 | ||||
Value | % of Total | Value | % of Total | Value | % of Total | |
Genome size (bp) | 19,120,811 | 100 | 18,807,174 | 100 | 19,169,086 | 100 |
DNA coding (bp) | 9,775,915 | 51.13 | 9,805,165 | 52.14 | 9,784,744 | 51.04 |
DNA G + C (bp) | 5,915,475 | 30.94 | 6,150,837 | 32.7 | 5,934,349 | 30.96 |
DNA scaffolds | 597 | 100 | 431 | 100 | 628 | 100 |
Total genes | 6327 | 100 | 6169 | 100 | 6301 | 100 |
Protein coding genes | 5932 | 95.21 | 5888 | 95.21 | 5963 | 95.21 |
RNA genes | 395 | 4.79 | 281 | 4.79 | 338 | 4.79 |
Pseudo genes | – | – | – | – | – | – |
Genes in internal clusters | – | – | – | – | – | – |
Genes with function prediction | 3927 | 66.2 | 3889 | 66.05 | 3939 | 66.06 |
Genes assigned to COGs | 5120 | 80.92 | 4988 | 80.86 | 5136 | 81.51 |
Genes with Pfam domains | 4803 | 75.91 | 4804 | 77.87 | 4818 | 76.46 |
Genes with signal peptides | 259 | 4.09 | 226 | 3.66 | 262 | 4.16 |
Genes with transm. helices | 1114 | 17.61 | 1095 | 17.75 | 1127 | 17.89 |
CRISPR repeats | 3 | 0.05 | 3 | 0.05 | 9 | 0.14 |
DBVPG8035 | NDK27A1 | |||||
Value | % of Total | Value | % of Total | |||
Genome size (bp) | 19,138,300 | 100 | 18,791,129 | 100 | ||
DNA coding (bp) | 9,827,091 | 51.35 | 9,871,244 | 52.53 | ||
DNA G + C (bp) | 5,914,797 | 30.91 | 6,140,718 | 32.68 | ||
DNA scaffolds | 557 | 100 | 272 | 100 | ||
Total genes | 6253 | 100 | 6132 | 100 | ||
Protein coding genes | 5922 | 95.21 | 5835 | 95.21 | ||
RNA genes | 331 | 4.79 | 297 | 4.79 | ||
Pseudo genes | – | – | – | – | ||
Genes in internal clusters | – | – | – | – | ||
Genes with function prediction | 3893 | 65.74 | 3907 | 66.96 | ||
Genes assigned to COGs | 5108 | 81.69 | 4985 | 81.29 | ||
Genes with Pfam domains | 4804 | 76.83 | 4820 | 78.6 | ||
Genes with signal peptides | 256 | 4.09 | 226 | 3.69 | ||
Genes with transmem. helices | 1122 | 17.94 | 1109 | 18.09 | ||
CRISPR repeats | 2 | 0.03 | 3 | 0.05 | ||