Table 5 Metagenome statistics
Label | CD2A | CD6A | MD2A | MD6A |
|---|---|---|---|---|
Libraries used | IUTO | IUTP | HCZO | IUTS |
Assembly tool(s) used | SOAPdenovo v1.05 (default) | SOAPdenovo v1.05 (default) | SOAPdenovo v1.05 (default) | SOAPdenovo v1.05 (default) |
Number of contigs after assembly | 247,547 | 141,229 | 292,231 | 257,101 |
Number of singletons after assembly | 1,568,087 | 83,272 | 1,166,131 | 1,565,449 |
minimal contig length | 200 | 200 | 200 | 200 |
Total bases assembled | 152,203,650 | 90,602,774 | 173,570,670 | 178,522,206 |
Contig n50 | 749 | 906 | 695 | 1.1Â kb |
% of Sequences assembled | 38% | 29% | 38% | 38% |
Measure for % assembled | reads mapped to contigs using BWA | reads mapped to contigs using BWA | reads mapped to contigs using BWA | reads mapped to contigs using BWA |