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Table 5 Metagenome statistics

From: Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate

Label CD2A CD6A MD2A MD6A
Libraries used IUTO IUTP HCZO IUTS
Assembly tool(s) used SOAPdenovo v1.05 (default) SOAPdenovo v1.05 (default) SOAPdenovo v1.05 (default) SOAPdenovo v1.05 (default)
Number of contigs after assembly 247,547 141,229 292,231 257,101
Number of singletons after assembly 1,568,087 83,272 1,166,131 1,565,449
minimal contig length 200 200 200 200
Total bases assembled 152,203,650 90,602,774 173,570,670 178,522,206
Contig n50 749 906 695 1.1 kb
% of Sequences assembled 38% 29% 38% 38%
Measure for % assembled reads mapped to contigs using BWA reads mapped to contigs using BWA reads mapped to contigs using BWA reads mapped to contigs using BWA