Table 3 Genome statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 6,124,363 | 100 |
DNA coding (bp) | 5,492,379 | 89.7 |
DNA G + C (bp) | 3,715,247 | 60.7 |
DNA scaffolds | 1 | – |
Total genes | 5335 | 100 |
Protein coding genes | 5189 | 97.3 |
RNA genes | 85 | 1.6 |
Pseudo genes | 61 | 1.1 |
Genes in internal clusters | NA | – |
Genes with function prediction | 4256 | 82.0 |
Genes assigned to COGs | 4013 | 77.3 |
Genes with Pfam domains | 3296 | 63.5 |
Genes with signal peptides | 434 | 8.4 |
Genes with transmembrane helices | 1365 | 26.3 |
CRISPR repeats | NA | – |