Table 4 Genome statistics according to the MGAP pipeline annotation (chromosome only)
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 1,851,618 | 100.00 |
DNA coding (bp) | 1,768,561 | 95.51 |
DNA GÂ +Â C (bp) | 871,250 | 47.05 |
DNA scaffolds | 1 | Â |
Total genes | 1906 | 100.00 |
Protein coding genes | 1853 | 97.22 |
RNA genes | 53 | 2.78 |
Pseudo genes | – | – |
Genes in internal clusters | 110 | 5.77 |
Genes with function prediction | 1522 | 79.85 |
Genes assigned to COGs | 1453 | 76.23 |
Genes with Pfam domains | 1629 | 85.47 |
Genes with signal peptides | 35 | 1.84 |
Genes with transmembrane helices | 462 | 24.24 |
CRISPR repeats | 8 | Â |