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Table 6 Antibiotic genes prediction

From: Insights from the draft genome into the pathogenicity of a clinical isolate of Elizabethkingia meningoseptica Em3

    E. meningoseptica E. anophelis E. miricola
Locus number Gene in Em3 Putative function Em3 502 R26 NUHP1 ATCC 33958 EM_CHUV
   β-lactam       
BFF93_RS01220 bla GOB-13 Class B carbapenemase BlaGOB-13 + + + + + +
BFF93_RS04805 β-lactamase + + + + + +
BFF93_RS05700 β-lactamase (EC 3.5.2.6) + + + + + +
BFF93_RS07625 bla ACME β-lactamase (BlaACME) VEB-1-like + + + + + +
BFF93_RS06860 bla B BJP β-lactamase + + + + + +
BFF93_RS09265 MBL fold metallo-hydrolase + + + + + +
BFF93_RS06995 β-lactamase (EC 3.5.2.6) + + + + + +
BFF93_RS14540 β-lactamase + + + + +
BFF93_RS12085 β-lactamase (EC 3.5.2.6) + + + + + +
BFF93_RS12510 MBL fold metallo-hydrolase + + + + + +
BFF93_RS14000 blaB-9 Class B carbapenemase BlaB-9 + + + + + +
BFF93_RS01365 β-lactamase (EC 3.5.2.6) + + + + + +
   Sulfonamide       
BFF93_RS00125 dhfR Dihydrofolate reductase DHFR + + + + + +
BFF93_RS17395 Bifunctional deaminase-reductase + + + + + +
BFF93_RS00125 dhfR Dihydrofolate reductase DHFR + + + + + +
BFF93_RS17395 Bifunctional deaminase-reductase protein + + + + + +
BFF93_RS14765 folP Dihydropteroate synthase FolP (EC 2.5.1.15) + + + + + +
   Tetracycline       
BFF93_RS08380 tetA Tetracycline efflux protein TetA + + + + + +
BFF93_RS07335 Transmembrane efflux protein + + + + + +
BFF93_RS12745 Antibiotic transporter + + + + + +
   Macrolide       
BFF93_RS00370 lolD Macrolide resistance, ABC transporter + + + + + +
BFF93_RS05670 emrB Erythromycin resistance, EmrB/QacA + + + +
BFF93_RS05670 emrB Erythromycin resistance, EmrB/QacA + + + + + +
BFF93_RS10830 emrB Erythromycin resistance, EmrB/QacA + + + + + +
BFF93_RS03320 Erythromycin esterase + + + + + +
   Quinolone       
BFF93_RS04670 gyrA DNA gyrase GyrA subunit A (T83S) + + + + + +
BFF93_RS09245 gyrB DNA gyrase GyrB subunit A (M437 L) + + + + + +
BFF93_RS08895 parE DNA topoisomerase IV subunit B (M437F/A473L) + + + + + +
   Aminoglycoside       
BFF93_RS10790 ant-6 Aminoglycoside 6-adenylyltransferase + + + + + +
   Chloramphenicol       
BFF93_RS14765 catB Chloramphenicol acetyltransferase CatB + + + + + +
BFF93_RS04080 bcr/cflA Bcr/CflA efflux pump + + + + + +
  1. “+” or “-” indicates the presence or absence of genes in the selected Elizabethkingia