TY - JOUR AU - Jean, S. S. AU - Lee, W. S. AU - Chen, F. L. AU - Ou, T. Y. AU - Hsueh, P. R. PY - 2014 DA - 2014// TI - Elizabethkingia meningoseptica: an important emerging pathogen causing healthcare-associated infections JO - J Hosp Infect VL - 86 UR - https://doi.org/10.1016/j.jhin.2014.01.009 DO - 10.1016/j.jhin.2014.01.009 ID - Jean2014 ER - TY - JOUR AU - Kim, K. K. AU - Kim, M. K. AU - Lim, J. H. AU - Park, H. Y. AU - Lee, S. T. PY - 2005 DA - 2005// TI - Transfer of Chryseobacterium meningosepticum and Chryseobacterium miricola to Elizabethkingia gen. Nov. as Elizabethkingia meningoseptica comb. nov. and Elizabethkingia miricola comb. nov JO - Int J Syst Evol Microbiol VL - 55 UR - https://doi.org/10.1099/ijs.0.63541-0 DO - 10.1099/ijs.0.63541-0 ID - Kim2005 ER - TY - JOUR AU - Oren, A. AU - Costa, M. S. AU - Garrity, G. M. AU - Rainey, F. A. AU - Rosselló-Móra, R. AU - Schink, B. AU - Sutcliffe, I. AU - Trujillo, M. E. AU - Whitman, W. B. PY - 2015 DA - 2015// TI - Proposal to include the rank of phylum in the international code of nomenclature of prokaryotes JO - Int J Syst Evol Microbiol VL - 65 UR - https://doi.org/10.1099/ijsem.0.000664 DO - 10.1099/ijsem.0.000664 ID - Oren2015 ER - TY - JOUR AU - Hsu, M. -. S. AU - Liao, C. -. H. AU - Huang, Y. -. T. AU - Liu, C. -. Y. AU - Yang, C. -. J. AU - Kao, K. -. L. AU - Hsueh, P. -. R. PY - 2011 DA - 2011// TI - Clinical features, antimicrobial susceptibilities, and outcomes of Elizabethkingia meningoseptica (Chryseobacterium meningosepticum) bacteremia at a medical center in Taiwan, 1999–2006 JO - Eur J Clin Microbiol Infect Dis VL - 30 UR - https://doi.org/10.1007/s10096-011-1223-0 DO - 10.1007/s10096-011-1223-0 ID - Hsu2011 ER - TY - STD TI - Teo J, Tan SY-Y, Liu Y, Tay M, Ding Y, Li Y, Kjelleberg S, Givskov M, Lin RTP, Yang L. Comparative genomic analysis of malaria mosquito vector associated novel pathogen Elizabethkingia anophelis. Genome Biol Evol. 2014; doi: 10.1093/gbe/evu1094. ID - ref5 ER - TY - JOUR AU - Ceyhan, M. AU - Celik, M. PY - 2011 DA - 2011// TI - Elizabethkingia meningosepticum (Chryseobacterium meningosepticum) infections in children JO - Int J Pediatr VL - 2011 UR - https://doi.org/10.1155/2011/215237 DO - 10.1155/2011/215237 ID - Ceyhan2011 ER - TY - JOUR AU - Balm, M. N. D. AU - Salmon, S. AU - Jureen, R. AU - Teo, C. AU - Mahdi, R. AU - Seetoh, T. AU - Teo, J. T. W. AU - Lin, R. T. P. AU - Fisher, D. A. PY - 2013 DA - 2013// TI - Bad design, bad practices, bad bugs: frustrations in controlling an outbreak of Elizabethkingia meningoseptica in intensive care units JO - J Hosp Infect VL - 85 UR - https://doi.org/10.1016/j.jhin.2013.05.012 DO - 10.1016/j.jhin.2013.05.012 ID - Balm2013 ER - TY - JOUR AU - Luke, S. P. M. AU - Daniel, S. O. AU - Annette, J. AU - Jane, F. T. AU - Simon, A. AU - Hugo, D. AU - Alison, H. H. PY - 2016 DA - 2016// TI - Waterborne Elizabethkingia meningoseptica in adult critical care JO - Emerg Infect Dis VL - 22 UR - https://doi.org/10.3201/eid2201.150139 DO - 10.3201/eid2201.150139 ID - Luke2016 ER - TY - JOUR AU - Pereira, G. H. AU - Garcia, D. O. AU - Abboud, C. S. AU - Barbosa, V. L. B. AU - PSL, S. PY - 2013 DA - 2013// TI - Nosocomial infections caused by Elizabethkingia meningoseptica: an emergent pathogen JO - Braz J Infect Dis VL - 17 UR - https://doi.org/10.1016/j.bjid.2013.02.011 DO - 10.1016/j.bjid.2013.02.011 ID - Pereira2013 ER - TY - JOUR AU - Neuner, E. A. AU - Ahrens, C. L. AU - Groszek, J. J. AU - Isada, C. AU - Vogelbaum, M. A. AU - Fissell, W. H. AU - Bhimraj, A. PY - 2012 DA - 2012// TI - Use of therapeutic drug monitoring to treat Elizabethkingia meningoseptica meningitis and bacteraemia in an adult JO - J Antimicrob Chemother VL - 67 UR - https://doi.org/10.1093/jac/dks053 DO - 10.1093/jac/dks053 ID - Neuner2012 ER - TY - JOUR AU - Kirby, J. T. AU - Sader, H. S. AU - Walsh, T. R. AU - Jones, R. N. PY - 2004 DA - 2004// TI - Antimicrobial susceptibility and epidemiology of a worldwide collection of Chryseobacterium spp.: report from the SENTRY antimicrobial surveillance program (1997-2001) JO - J Clin Microbiol VL - 42 UR - https://doi.org/10.1128/JCM.42.1.445-448.2004 DO - 10.1128/JCM.42.1.445-448.2004 ID - Kirby2004 ER - TY - JOUR AU - Opota, O. AU - Diene, S. M. AU - Bertelli, C. AU - Prod'hom, G. AU - Eckert, P. AU - Greub, G. PY - 2017 DA - 2017// TI - Genome of the carbapenemase-producing clinical isolate Elizabethkingia miricola EM_CHUV and comparative genomics with Elizabethkingia meningoseptica and Elizabethkingia anophelis: evidence for intrinsic multidrug resistance trait of emerging pathogens JO - Int J Antimicrob Agents VL - 49 UR - https://doi.org/10.1016/j.ijantimicag.2016.09.031 DO - 10.1016/j.ijantimicag.2016.09.031 ID - Opota2017 ER - TY - JOUR AU - Breurec, S. AU - Criscuolo, A. AU - Diancourt, L. AU - Rendueles, O. AU - Vandenbogaert, M. AU - Passet, V. AU - Caro, V. AU - Rocha, E. P. C. AU - Touchon, M. AU - Brisse, S. PY - 2016 DA - 2016// TI - Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep30379 DO - 10.1038/srep30379 ID - Breurec2016 ER - TY - JOUR AU - Lau, S. K. P. AU - Chow, W. -. N. AU - Foo, C. -. H. AU - Curreem, S. O. T. AU - Lo, G. C. -. S. AU - Teng, J. L. L. AU - Chen, J. H. K. AU - Ng, R. H. Y. AU - Wu, A. K. L. AU - Cheung, I. Y. Y. PY - 2016 DA - 2016// TI - Elizabethkingia anophelis bacteremia is associated with clinically significant infections and high mortality JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep26045 DO - 10.1038/srep26045 ID - Lau2016 ER - TY - JOUR AU - Richter, M. AU - Rosselló-Móra, R. PY - 2009 DA - 2009// TI - Shifting the genomic gold standard for the prokaryotic species definition JO - Proc Natl Acad Sci U S A VL - 106 UR - https://doi.org/10.1073/pnas.0906412106 DO - 10.1073/pnas.0906412106 ID - Richter2009 ER - TY - JOUR AU - Kämpfer, P. AU - Busse, H. -. J. AU - McInroy, J. A. AU - Glaeser, S. P. PY - 2015 DA - 2015// TI - Elizabethkingia endophytica sp. nov., isolated from Zea Mays and emended description of Elizabethkingia anophelis Kämpfer et al. 2011 JO - Int J Syst Evol Microbiol VL - 65 UR - https://doi.org/10.1099/ijs.0.000236 DO - 10.1099/ijs.0.000236 ID - Kämpfer2015 ER - TY - JOUR AU - Doijad, S. AU - Ghosh, H. AU - Glaeser, S. AU - Kämpfer, P. AU - Chakraborty, T. PY - 2016 DA - 2016// TI - Taxonomic reassessment of the genus Elizabethkingia using whole-genome sequencing: Elizabethkingia endophytica Kämpfer et al. 2015 is a later subjective synonym of Elizabethkingia anophelis Kämpfer et al. 2011 JO - Int J Syst Evol Microbiol VL - 66 UR - https://doi.org/10.1099/ijsem.0.000821 DO - 10.1099/ijsem.0.000821 ID - Doijad2016 ER - TY - JOUR AU - Klein, C. C. AU - Alves, J. M. P. AU - Serrano, M. G. AU - Buck, G. A. AU - Vasconcelos, A. T. R. AU - Sagot, M. -. F. AU - Teixeira, M. M. G. AU - Camargo, E. P. AU - Motta, M. C. M. PY - 2013 DA - 2013// TI - Biosynthesis of vitamins and cofactors in bacterium-harbouring Trypanosomatids depends on the symbiotic association as revealed by genomic analyses JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0079786 DO - 10.1371/journal.pone.0079786 ID - Klein2013 ER - TY - JOUR AU - Bankevich, A. AU - Nurk, S. AU - Antipov, D. AU - Gurevich, A. A. AU - Dvorkin, M. AU - Kulikov, A. S. AU - Lesin, V. M. AU - Nikolenko, S. I. AU - Pham, S. AU - Prjibelski, A. D. PY - 2012 DA - 2012// TI - SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing JO - J Comp Biol VL - 19 UR - https://doi.org/10.1089/cmb.2012.0021 DO - 10.1089/cmb.2012.0021 ID - Bankevich2012 ER - TY - JOUR AU - Tatusova, T. AU - DiCuccio, M. AU - Badretdin, A. AU - Chetvernin, V. AU - Nawrocki, E. P. AU - Zaslavsky, L. AU - Lomsadze, A. AU - Pruitt, K. D. AU - Borodovsky, M. AU - Ostell, J. PY - 2016 DA - 2016// TI - NCBI prokaryotic genome annotation pipeline JO - Nucleic Acids Res VL - 44 UR - https://doi.org/10.1093/nar/gkw569 DO - 10.1093/nar/gkw569 ID - Tatusova2016 ER - TY - STD TI - Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M. The RAST server: rapid annotations using subsystems technology. BMC Genet. 2008;9 doi:10.1186/1471-2164-9-75. ID - ref21 ER - TY - JOUR AU - Overbeek, R. AU - Olson, R. AU - Pusch, G. D. AU - Olsen, G. J. AU - Davis, J. J. AU - Disz, T. AU - Edwards, R. A. AU - Gerdes, S. AU - Parrello, B. AU - Shukla, M. PY - 2014 DA - 2014// TI - The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST) JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1226 DO - 10.1093/nar/gkt1226 ID - Overbeek2014 ER - TY - JOUR AU - Song, H. AU - Bélanger, M. AU - Whitlock, J. AU - Kozarov, E. AU - Progulske-Fox, A. PY - 2005 DA - 2005// TI - Hemagglutinin B is involved in the adherence of Porphyromonas gingivalis to human coronary artery endothelial cells JO - Infect Immun VL - 73 UR - https://doi.org/10.1128/IAI.73.11.7267-7273.2005 DO - 10.1128/IAI.73.11.7267-7273.2005 ID - Song2005 ER - TY - JOUR AU - Berg, B. M. AU - Beekhuizen, H. AU - Willems, R. J. L. AU - Mooi, F. R. AU - Furth, R. PY - 1999 DA - 1999// TI - Role of Bordetella pertussis virulence factors in adherence to epithelial cell lines derived from the human respiratory tract JO - Infect Immun VL - 67 ID - Berg1999 ER - TY - JOUR AU - Darvish Alipour Astaneh, S. AU - Rasooli, I. AU - Mousavi Gargari, S. L. PY - 2014 DA - 2014// TI - The role of filamentous hemagglutinin adhesin in adherence and biofilm formation in Acinetobacter baumannii ATCC19606T JO - Microb Pathog VL - 74 UR - https://doi.org/10.1016/j.micpath.2014.07.007 DO - 10.1016/j.micpath.2014.07.007 ID - Darvish Alipour Astaneh2014 ER - TY - JOUR AU - Kline, K. A. AU - Fälker, S. AU - Dahlberg, S. AU - Normark, S. AU - Henriques-Normark, B. PY - 2009 DA - 2009// TI - Bacterial adhesins in host-microbe interactions JO - Cell Host Microbe VL - 5 UR - https://doi.org/10.1016/j.chom.2009.05.011 DO - 10.1016/j.chom.2009.05.011 ID - Kline2009 ER - TY - JOUR AU - Yaron, S. AU - Römling, U. PY - 2014 DA - 2014// TI - Biofilm formation by enteric pathogens and its role in plant colonization and persistence JO - Microb Biotechnol VL - 7 UR - https://doi.org/10.1111/1751-7915.12186 DO - 10.1111/1751-7915.12186 ID - Yaron2014 ER - TY - JOUR AU - Garcia, M. C. AU - Lipke, P. N. AU - Klotz, S. A. PY - 2013 DA - 2013// TI - Pathogenic microbial amyloids: their function and the host response JO - OA microbial VL - 1 ID - Garcia2013 ER - TY - JOUR AU - Telford, J. L. AU - Barocchi, M. A. AU - Margarit, I. AU - Rappuoli, R. AU - Grandi, G. PY - 2006 DA - 2006// TI - Pili in gram-positive pathogens JO - Nat Rev Micro VL - 4 UR - https://doi.org/10.1038/nrmicro1443 DO - 10.1038/nrmicro1443 ID - Telford2006 ER - TY - JOUR AU - Tweten, R. K. PY - 2005 DA - 2005// TI - Cholesterol-dependent cytolysins, a family of versatile pore-forming toxins JO - Infect Immun VL - 73 UR - https://doi.org/10.1128/IAI.73.10.6199-6209.2005 DO - 10.1128/IAI.73.10.6199-6209.2005 ID - Tweten2005 ER - TY - JOUR AU - Hotze, E. M. AU - Le, H. M. AU - Sieber, J. R. AU - Bruxvoort, C. AU - McInerney, M. J. AU - Tweten, R. K. PY - 2013 DA - 2013// TI - Identification and characterization of the first cholesterol-dependent cytolysins from gram-negative bacteria JO - Infect Immun VL - 81 UR - https://doi.org/10.1128/IAI.00927-12 DO - 10.1128/IAI.00927-12 ID - Hotze2013 ER - TY - STD TI - Madden JC, Ruiz N, Caparon M. Cytolysin-mediated translocation (CMT). Cell. 104:143–52. ID - ref32 ER - TY - JOUR AU - Portnoy, D. A. AU - Jacks, P. S. AU - Hinrichs, D. J. PY - 1988 DA - 1988// TI - Role of hemolysin for the intracellular growth of Listeria monocytogenes JO - J Exp Med VL - 167 UR - https://doi.org/10.1084/jem.167.4.1459 DO - 10.1084/jem.167.4.1459 ID - Portnoy1988 ER - TY - JOUR AU - O'Brien, D. K. AU - Melville, S. B. PY - 2004 DA - 2004// TI - Effects of Clostridium perfringens Alpha-toxin (PLC) and perfringolysin O (PFO) on cytotoxicity to macrophages, on escape from the phagosomes of macrophages, and on persistence of C. perfringens in host tissues JO - Infect Immun VL - 72 UR - https://doi.org/10.1128/IAI.72.9.5204-5215.2004 DO - 10.1128/IAI.72.9.5204-5215.2004 ID - O'Brien2004 ER - TY - JOUR AU - Pradeep, B. E. AU - Mahalingam, N. AU - Manivannan, B. AU - Padmanabhan, K. AU - Nilawe, P. AU - Gurung, G. AU - Chhabra, A. AU - Nagaraja, V. PY - 2014 DA - 2014// TI - Draft genome sequence of Elizabethkingia meningoseptica, isolated from a postoperative endophthalmitis patient JO - Genome Announc. VL - 2 UR - https://doi.org/10.1128/genomeA.01335-14 DO - 10.1128/genomeA.01335-14 ID - Pradeep2014 ER - TY - JOUR AU - Lin, P. -. Y. AU - Chu, C. AU - Su, L. -. H. AU - Huang, C. -. T. AU - Chang, W. -. Y. AU - Chiu, C. -. H. PY - 2004 DA - 2004// TI - Clinical and microbiological analysis of bloodstream infections caused by Chryseobacterium meningosepticum in nonneonatal patients JO - J Clin Microbiol VL - 42 UR - https://doi.org/10.1128/JCM.42.7.3353-3355.2004 DO - 10.1128/JCM.42.7.3353-3355.2004 ID - Lin2004 ER - TY - JOUR AU - Woese, C. R. AU - Kandler, O. AU - Wheelis, M. L. PY - 1990 DA - 1990// TI - Towards a natural system of organisms: proposal for the domains Archaea, bacteria, and Eucarya JO - Proc Natl Acad Sci U S A VL - 87 UR - https://doi.org/10.1073/pnas.87.12.4576 DO - 10.1073/pnas.87.12.4576 ID - Woese1990 ER - TY - CHAP AU - Bernardet, J. -. F. ED - Krieg, N. R. ED - Staley, J. T. ED - Brown, D. R. ED - Hedlund, B. P. ED - Paster, B. J. ED - Ward, N. L. ED - WWWB, L. PY - 2010 DA - 2010// TI - Class II. Flavobacteriia class. nov BT - Bergey’s Manual of systematic bacteriology PB - Springer CY - New York ID - Bernardet2010 ER - TY - CHAP AU - Bernardet, J. F. AU - Order, I. ED - Krieg, N. R. ED - Staley, J. T. ED - Brown, D. R. ED - Hedlund, B. P. ED - Paster, B. J. ED - Ward, N. L. ED - Ludwig, W. ED - Whitman, W. B. PY - 2011 DA - 2011// TI - Flavobacteriales ord. nov BT - Bergey’s Manual of systematic bacteriology PB - Springer CY - New York ID - Bernardet2011 ER - TY - STD TI - Bernardet, Nakagawa and Holmes 2002, 1057. In: Bergey's Manual of Systematic Bacteriology, vol. 4. 2nd ed. New York: The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes. Spring; 2011. p. 106–314. ID - ref40 ER - TY - JOUR AU - Ashburner, M. AU - Ball, C. A. AU - Blake, J. A. AU - Botstein, D. AU - Butler, H. AU - Cherry, J. M. AU - Davis, A. P. AU - Dolinski, K. AU - Dwight, S. S. AU - Eppig, J. T. PY - 2000 DA - 2000// TI - Gene ontology: tool for the unification of biology JO - Nat Genet VL - 25 UR - https://doi.org/10.1038/75556 DO - 10.1038/75556 ID - Ashburner2000 ER - TY - JOUR AU - Kumar, S. AU - Stecher, G. AU - Tamura, K. PY - 2016 DA - 2016// TI - MEGA7: Molecular evolutionary genetics analysis version 7.0 For bigger datasets JO - Mol Biol Evol VL - 33 UR - https://doi.org/10.1093/molbev/msw054 DO - 10.1093/molbev/msw054 ID - Kumar2016 ER - TY - STD TI - Kukutla P, Lindberg BG, Pei D, Rayl M, Yu W, Steritz M, Faye I, Xu J. Draft genome sequences of Elizabethkingia anophelis strains R26T and Ag1 from the midgut of the malaria mosquito Anopheles gambiae. Genome Announc. 2013;1(6):e01030–13. ID - ref43 ER - TY - JOUR AU - Matyi, S. A. AU - Hoyt, P. R. AU - Hosoyama, A. AU - Yamazoe, A. AU - Fujita, N. AU - Gustafson, J. E. PY - 2013 DA - 2013// TI - Draft genome sequences of Elizabethkingia meningoseptica JO - Genome Announc. VL - 1 UR - https://doi.org/10.1128/genomeA.00444-13 DO - 10.1128/genomeA.00444-13 ID - Matyi2013 ER - TY - JOUR AU - Lee, D. AU - Kim, Y. -. K. AU - Kim, Y. -. S. AU - Kim, T. -. J. PY - 2015 DA - 2015// TI - Complete genome sequence of Elizabethkingia sp. Bm10, a symbiotic bacterium of the wood-feeding termite Reticulitermes speratus KMT1 JO - Genome Announc. VL - 3 ID - Lee2015 ER - TY - JOUR AU - Nicholson, A. C. AU - Humrighouse, B. W. AU - Graziano, J. C. AU - Emery, B. AU - McQuiston, J. R. PY - 2016 DA - 2016// TI - Draft genome sequences of strains representing each of the Elizabethkingia Genomospecies previously determined by DNA-DNA hybridization JO - Genome Announc VL - 4 UR - https://doi.org/10.1128/genomeA.00045-16 DO - 10.1128/genomeA.00045-16 ID - Nicholson2016 ER - TY - JOUR AU - Auch, A. F. AU - Jan, M. AU - Klenk, H. P. AU - Göker, M. PY - 2010 DA - 2010// TI - Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison JO - Stand Genomic Sci VL - 2 UR - https://doi.org/10.4056/sigs.531120 DO - 10.4056/sigs.531120 ID - Auch2010 ER - TY - JOUR AU - Yoon, S. -. H. AU - Ha, S. -. M. AU - Kwon, S. AU - Lim, J. AU - Kim, Y. AU - Seo, H. AU - Chun, J. PY - 2017 DA - 2017// TI - Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies JO - Int J Syst Evol Microbiol VL - 67 UR - https://doi.org/10.1099/ijsem.0.002404 DO - 10.1099/ijsem.0.002404 ID - Yoon2017 ER - TY - STD TI - Kwasny SM, Opperman TJ. Static biofilm cultures of Gram-positive pathogens grown in a microtiter format used for anti-biofilm drug discovery. Current protocols in pharmacology / editorial board, SJ Enna (editor-in-chief). 2010, 50:13A.18.11-13A.18.23. ID - ref49 ER - TY - STD TI - Blom J, Kreis J, Spänig S, Juhre T, Bertelli C, Ernst C, Goesmann A. EDGAR 2.0: An enhanced software platform for comparative gene content analyses. Nucleic Acids Res. 2016; doi:10.1093/nar/gkw255. ID - ref50 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Felsenstein, J. PY - 1989 DA - 1989// TI - PHYLIP - phylogeny inference package (version 3.2) JO - Cladistics VL - 5 ID - Felsenstein1989 ER -