Table 3 Genome statistics
From: Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 44,362,654 | 100.00 |
DNA coding (bp) | 15,030,327 | 33.88 |
DNA G + C (bp) | 22,021,621 | 49.64 |
DNA scaffolds | – | |
Total genes | 10,661 | 100.00 |
Protein coding genes | 10,391 | 97.47 |
RNA genes | 875 | 8.21 |
Pseudo genes | unknown | |
Genes in internal clusters | unknown | |
Genes with function prediction | 7532 | 70.65 |
Genes assigned to COGs | 2065 | 19.87 |
Genes with Pfam domains | 6287 | 58.97 |
Genes with signal peptides | 761 | 7.1 |
Genes with transmembrane helices | 2752 | 25.81 |
CRISPR repeats | 0 |