Table 4 Number of genes associated with general COG functional categories
SC-57 | SC-532 | ||||
|---|---|---|---|---|---|
Code | Value | % age | Value | % age | Description |
J | 198 | 8.92 | 199 | 9.05 | Translation, ribosomal structure and biogenesis |
A | 82 | 3.69 | 81 | 3.69 | RNA processing and modification |
K | 153 | 6.89 | 151 | 6.87 | Transcription |
L | 102 | 4.59 | 100 | 4.55 | Replication, recombination and repair |
B | 1 | 0.05 | 1 | 0.05 | Chromatin structure and dynamics |
D | 27 | 1.22 | 27 | 1.23 | Cell cycle control, Cell division, chromosome partitioning |
V | 48 | 2.16 | 43 | 1.96 | Defense mechanisms |
T | 67 | 3.02 | 67 | 3.05 | Signal transduction mechanisms |
M | 101 | 4.55 | 101 | 4.6 | Cell wall/membrane biogenesis |
N | 4 | 0.18 | 4 | 0.18 | Cell motility |
U | 14 | 0.63 | 14 | 0.64 | Intracellular trafficking and secretion |
O | 82 | 3.69 | 81 | 3.69 | Posttranslational modification, protein turnover, chaperones |
C | 117 | 5.27 | 117 | 5.32 | Energy production and conversion |
G | 170 | 7.66 | 168 | 7.64 | Carbohydrate transport and metabolism |
E | 206 | 9.28 | 205 | 9.33 | Amino acid transport and metabolism |
F | 88 | 3.96 | 86 | 3.91 | Nucleotide transport and metabolism |
H | 142 | 6.4 | 141 | 6.41 | Coenzyme transport and metabolism |
I | 99 | 4.46 | 98 | 4.46 | Lipid transport and metabolism |
P | 144 | 6.49 | 144 | 6.55 | Inorganic ion transport and metabolism |
Q | 47 | 2.12 | 47 | 2.14 | Secondary metabolites biosynthesis, transport and catabolism |
R | 200 | 9.01 | 197 | 8.96 | General function prediction only |
S | 167 | 7.52 | 168 | 7.64 | Function unknown |
- | 651 | 24.57 | 658 | 24.92 | Not in COGs |