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Fig. 2 | Standards in Genomic Sciences

Fig. 2

From: Draft genome sequences of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from human patients

Fig. 2

Phylogenetic tree based on 16S rRNA gene sequences of the genus Staphylococcus. The names and corresponding accession numbers are shown, including the S. cohnii (SC-57) sequence from this study, which was 100% similar to SC-532. Sequences were aligned using Clustal W2 and MUSCLE [13] and uploaded in DAMBE [15] to build a phylogenetic tree using a Maximum Likelihood method with the GTR substitution model, rate heterogeneity among sites modeled by a gamma distribution, and 1000 bootstrap samples. The number at the nodes represents bootstrap support. Generated with the ‘Quick add’ option on, and the number of branches allowed to cross during tree searching set to 1 for local optimization. Bacillus subtilis subsp. subtilis (AB598736) was chosen as the out-group to root the tree

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Environmental Microbiome

ISSN: 2524-6372