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Table 4 Number of genes associated with the general COG functional categories

From: Permanent draft genome sequence of Frankia sp. NRRL B-16219 reveals the presence of canonical nod genes, which are highly homologous to those detected in Candidatus Frankia Dg1 genome

Code Value % agea Description
J 178 4.27 Translation, ribosomal structure and biogenesis
A 1 0.02 RNA processing and modification
K 408 9.79 Transcription
L 109 2.62 Replication, recombination and repair
B 1 0.02 Chromatin structure and dynamics
D 32 0.77 Cell cycle control, cell division, chromosome partitioning
V 135 3.24 Defense mechanisms
T 249 5.98 Signal transduction mechanisms
M 173 4.15 Cell wall/membrane biogenesis
N 21 0.5 Cell motility
U 30 0.72 Intracellular trafficking, secretion, and vesicular transport
O 140 3.36 Posttranslational modification, protein turnover, chaperones
C 250 6 Energy production and conversion
G 207 4.97 Carbohydrate transport and metabolism
E 297 7.13 Amino acid transport and metabolism
F 94 2.26 Nucleotide transport and metabolism
H 262 6.29 Coenzyme transport and metabolism
I 351 8.42 Lipid transport and metabolism
P 210 5.04 Inorganic ion transport and metabolism
Q 256 6.14 Secondary metabolites biosynthesis, transport and catabolism
R 508 12.19 General function prediction only
S 178 4.27 Function unknown
- 3247 47.36 Not in COGs
  1. aThe total is based on the total number of protein-coding genes in the genome