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Table 3 Genome statistics

From: Permanent draft genome sequence of Frankia sp. NRRL B-16219 reveals the presence of canonical nod genes, which are highly homologous to those detected in Candidatus Frankia Dg1 genome

Attribute Value % of Totala
Genome size (bp) 8,032,739 100.0
DNA coding (bp) 6,603,166 82.20
DNA G + C (bp) 5,760,840 71.72
DNA Contigs289100   .0
Total genes 6859 100.0
Protein coding genes 6, 211 91.01
RNA genes 53 0.77
Pseudo genesb 561 8.18
Genes in internal clusters - -
Genes with function prediction 5046 73.60
Genes assigned to COGs 3609 52.64
Genes with Pfam domains 4735 69.06
Genes with signal peptides 176 2.57
Genes with transmembrane helices 296 4.32
CRISPR repeats 2 -
  1. aThe total is based on either the size of the genome in base pairs or the total genes in the annotated genome
  2. bPseudo genes may also be counted as protein coding or RNA genes, so is not additive under total gene count