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Table 5 Number of genes associated with general COG functional categories

From: High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460

Code Value %age Description
J 226 6% Translation, ribosomal structure and biogenesis
A 0 0% RNA processing and modification
K 166 4% Transcription
L 97 3% Replication, recombination and repair
B 0 0% Chromatin structure and dynamics
D 43 1% Cell cycle control, Cell division, chromosome partitioning
V 71 2% Defense mechanisms
T 228 6% Signal transduction mechanisms
M 146 4% Cell wall/membrane biogenesis
N 25 1% Cell motility
U 23 1% Intracellular trafficking and secretion
O 125 3% Posttranslational modification, protein turnover, chaperones
C 152 4% Energy production and conversion
G 179 5% Carbohydrate transport and metabolism
E 280 7% Amino acid transport and metabolism
F 90 2% Nucleotide transport and metabolism
H 149 4% Coenzyme transport and metabolism
I 116 3% Lipid transport and metabolism
P 138 4% Inorganic ion transport and metabolism
Q 58 2% Secondary metabolites biosynthesis, transport and catabolism
R 217 6% General function prediction only
S 145 4% Function unknown
- 1080 28% Not in COGs
  1. The total is based on the total number of protein coding genes in the genome. Proteins were assigned to the latest updated COG database using the COGnitor program [57]. Other functional categories: defense and mobilome account for 2% and 1%, respectively