Table 4 Number of protein coding genes of N. dokdonensis FR1436 associated with the general COG functional categories
From: Complete genome sequence of the sand-sediment actinobacterium Nocardioides dokdonensis FR1436T
Code | Value | Percentage* | Description |
|---|---|---|---|
J | 151 | 3.68 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.02 | RNA processing and modification |
K | 212 | 5.17 | Transcription |
L | 164 | 4.00 | Replication, recombination, and repair |
B | 1 | 0.02 | Chromatin structure and dynamics |
D | 25 | 0.61 | Cell cycle control, cell division and chromosome partitioning |
V | 41 | 1.00 | Defense mechanisms |
T | 116 | 2.83 | Signal transduction mechanisms |
M | 124 | 3.02 | Cell wall/membrane/envelope biogenesis |
N | 3 | 0.07 | Cell motility |
U | 29 | 0.71 | Intracellular trafficking, and secretion |
O | 111 | 2.70 | Posttranslational modification, protein turnover, chaperones |
C | 240 | 5.85 | Energy production and conversion |
G | 145 | 3.53 | Carbohydrate transport and metabolism |
E | 317 | 7.72 | Amino acid transport and metabolism |
F | 75 | 1.83 | Nucleotide transport and metabolism |
H | 106 | 2.58 | Coenzyme metabolism |
I | 232 | 5.65 | Lipid metabolism |
P | 133 | 3.24 | Inorganic ion transport and metabolism |
Q | 86 | 2.10 | Secondary metabolites biosynthesis, transport, and catabolism |
R | 321 | 7.82 | General function prediction only |
S | 199 | 4.85 | Function unknown |
- | 1272 | 30.99 | Not in COGs |