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Table 4 Number of genes associated with general COG functional categories

From: Insights into Cedecea neteri strain M006 through complete genome sequence, a rare bacterium from aquatic environment

Code

Value

% agea

Description

J

189

4.70

Translation, ribosomal structure and biogenesis

A

1

0.02

RNA processing and modification

K

395

9.82

Transcription

L

133

3.31

Replication, recombination and repair

B

0

0.00

Chromatin structure and dynamics

D

32

0.80

Cell cycle control, Cell division, chromosome partitioning

V

47

1.17

Defense mechanisms

T

181

4.50

Signal transduction mechanisms

M

224

5.57

Cell wall/membrane biogenesis

N

117

2.91

Cell motility

U

105

2.61

Intracellular trafficking and secretion

O

145

3.60

Posttranslational modification, protein turnover, chaperones

C

231

5.74

Energy production and conversion

G

362

9.00

Carbohydrate transport and metabolism

E

412

10.24

Amino acid transport and metabolism

F

96

2.39

Nucleotide transport and metabolism

H

158

3.93

Coenzyme transport and metabolism

I

109

2.71

Lipid transport and metabolism

P

266

6.61

Inorganic ion transport and metabolism

Q

75

1.86

Secondary metabolites biosynthesis, transport and catabolism

R

409

10.16

General function prediction only

S

337

8.37

Function unknown

-

939

20.64

Not in COGs

  1. aThe total is based on the total number of protein coding genes in the annotated genome