Table 3 Genome statistics
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 4,965,436 | 100 |
DNA coding (bp) | 4,350,834 | 87.62 |
DNA G + C (bp) | 2,701,616 | 54.41 |
DNA scaffolds | 1 | 100 |
Total genes | 4550 | 100 |
Protein coding genes | 4447 | 97.74 |
RNA genes | 103 | 2.26 |
rRNA genes | 22 | 0.48 |
tRNA | 80 | 1.76 |
Pseudo genes | 24 | 0.53 |
Genes in paralog clusters | 3462 | 76.09 |
Genes with function prediction | 4091 | 89.91 |
Genes assignmed to COGs | 3611 | 79.36 |
Genes with Pfam peptides | 4095 | 90.00 |
Genes with signal peptides | 466 | 10.24 |
Genes with transmembrane helices | 1079 | 23.71 |
CRISPR repeats | 0 | 0.00 |