Fig. 2
From: The genome of the cotton bacterial blight pathogen Xanthomonas citri pv. malvacearum strain MSCT1
The phylogenetic tree indicating current placement of the source organism. The phylogenetic tree was constructed based on the sequences of genes coding for ATP synthase β chain (atpD), heat shock protein 70 (dnaK), and gyrase subunit β (gyrB) for Xanthomonas species. MAFFT (version 7) [85] was used to align the sequences; the evolutionary history was inferred by using the Maximum Likelihood, with 100 bootstraps, method based on the Tamura-Nei model [86] with MEGA6 [87] software. Sequence identifiers of each subunit are as reported by Ah-You et al. 2009 [17]. Type (T) and Pathovar Type (PT) strains are noted in superscript