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Table 6 Number of genes associated with general COG functional categories

From: Draft genome sequences of strains Salinicola socius SMB35T, Salinicola sp. MH3R3–1 and Chromohalobacter sp. SMB17 from the Verkhnekamsk potash mining region of Russia

Code

S. socius SMB35T

Salinicola sp. MH3R3–1

Chromohalobacter sp. SMB17

Description

Value

%

Value

%

Value

%

 

J

188

5.03

182

5.03

175

5.02

Translation, ribosomal structure and biogenesis

A

159

4.25

157

4.34

164

4.70

RNA processing and modification

K

27

0.72

27

0.75

25

0.72

Transcription

L

111

2.97

107

2.96

106

3.04

Replication, recombination and repair

B

-

-

-

-

-

-

Chromatin structure and dynamics

D

31

0.83

30

0.83

30

0.86

Cell cycle control, cell division, chromosome partitioning

V

62

1.66

73

2.02

67

1.92

Defense mechanisms

T

101

2.70

98

2.71

90

2.58

Signal transduction mechanisms

M

164

4.39

170

4.70

157

4.50

Cell wall/membrane biogenesis

N

73

1.95

72

1.99

64

1.84

Cell motility

U

210

5.62

216

5.97

154

4.42

Intracellular trafficking and secretion

O

82

2.19

88

2.43

103

2.95

Posttranslational modification, protein turnover, chaperones

C

100

2.67

129

3.56

106

3.04

Energy production and conversion

G

365

9.76

375

10.36

421

12.08

Carbohydrate transport and metabolism

E

433

11.58

442

12.21

360

10.33

Amino acid transport and metabolism

F

102

2.73

97

2.68

106

3.04

Nucleotide transport and metabolism

H

234

6.26

188

5.19

253

7.26

Coenzyme transport and metabolism

I

146

3.90

153

4.23

156

4.48

Lipid transport and metabolism

P

129

3.45

104

2.87

134

3.84

Inorganic ion transport and metabolism

Q

6

0.16

6

0.17

4

0.11

Secondary metabolites biosynthesis, transport and catabolism

R

291

4.52

242

6.69

262

7.52

General function prediction only

S

122

3.26

115

3.18

97

2.78

Function unknown

-

1702

45.52

1635

45.17

1539

44.15

Not in COGs

  1. The total is based on the total number of protein coding genes in the genome