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Table 5 Genome statistics

From: Draft genome sequences of strains Salinicola socius SMB35T, Salinicola sp. MH3R3–1 and Chromohalobacter sp. SMB17 from the Verkhnekamsk potash mining region of Russia

Attribute

S. socius SMB35T

Salinicola sp. MH3R3–1

Chromohalobacter sp. SMB17

Value

% of Total

Value

% of Total

Value

% of Total

Genome size (bp)

4,185,599

100.0

4,121,883

100.0

3,775,577

100.0

DNA coding (bp)

3,568,310

85.3

3,547,145

86.0

3,547,145

87.0

DNA G + C (bp)

2,244,356

62.2

2,554,139

62.0

2,284,727

60.5

DNA scaffolds

173

-

159

-

118

-

Total genes

3828

100.0

3750

100.0

3609

100.0

Protein coding genes

3739

97.7

3620

96.5

3486

96.6

RNA genes

89

2.3

130

3.5

123

3.4

Pseudo genes

-

-

-

-

-

-

Genes in internal clusters

-

-

-

-

-

-

Genes with function prediction

2832

74.0

2903

77.4

2875

79.7

Genes assigned to COGs

2037

54.5

1870

49.9

1947

54.0

Genes with Pfam domains

2652

69.3

2609

69.6

2731

75.7

Genes with signal peptides

239

6.4

238

6.6

224

6.4

Genes with transmembrane helices

859

23.0

867

24.0

815

23.4

CRISPR repeats

0

-

0

-

0

-