Attribute | S. socius SMB35T | Salinicola sp. MH3R3–1 | Chromohalobacter sp. SMB17 | |||
---|---|---|---|---|---|---|
Value | % of Total | Value | % of Total | Value | % of Total | |
Genome size (bp) | 4,185,599 | 100.0 | 4,121,883 | 100.0 | 3,775,577 | 100.0 |
DNA coding (bp) | 3,568,310 | 85.3 | 3,547,145 | 86.0 | 3,547,145 | 87.0 |
DNA G + C (bp) | 2,244,356 | 62.2 | 2,554,139 | 62.0 | 2,284,727 | 60.5 |
DNA scaffolds | 173 | - | 159 | - | 118 | - |
Total genes | 3828 | 100.0 | 3750 | 100.0 | 3609 | 100.0 |
Protein coding genes | 3739 | 97.7 | 3620 | 96.5 | 3486 | 96.6 |
RNA genes | 89 | 2.3 | 130 | 3.5 | 123 | 3.4 |
Pseudo genes | - | - | - | - | - | - |
Genes in internal clusters | - | - | - | - | - | - |
Genes with function prediction | 2832 | 74.0 | 2903 | 77.4 | 2875 | 79.7 |
Genes assigned to COGs | 2037 | 54.5 | 1870 | 49.9 | 1947 | 54.0 |
Genes with Pfam domains | 2652 | 69.3 | 2609 | 69.6 | 2731 | 75.7 |
Genes with signal peptides | 239 | 6.4 | 238 | 6.6 | 224 | 6.4 |
Genes with transmembrane helices | 859 | 23.0 | 867 | 24.0 | 815 | 23.4 |
CRISPR repeats | 0 | - | 0 | - | 0 | - |