Table 4 Number of genes of Pedobacter steynii DX4 with the general COG functional categories
From: The complete genome sequence of the cold adapted crude-oil degrader: Pedobacter steynii DX4
Code | Value | % of totala | Description |
|---|---|---|---|
J | 155 | 2.9 | Translation, ribosomal structure and biogenesis |
A | 0 | 0 | RNA processing and modification |
K | 417 | 7.8 | Transcription |
L | 146 | 2.7 | Replication, recombination and repair |
B | 1 | 0 | Chromatin structure and dynamics |
D | 20 | 0.4 | Cell cycle control, Cell division, chromosome partitioning |
V | 94 | 1.8 | Defense mechanisms |
T | 261 | 4.9 | Signal transduction mechanisms |
M | 306 | 5.7 | Cell wall/membrane biogenesis |
N | 17 | 0.3 | Cell motility |
U | 29 | 0.5 | Intracellular trafficking and secretion |
O | 158 | 2.9 | Posttranslational modification, protein turnover, chaperones |
C | 150 | 2.8 | Energy production and conversion |
G | 255 | 4.8 | Carbohydrate transport and metabolism |
E | 257 | 4.8 | Amino acid transport and metabolism |
F | 74 | 1.4 | Nucleotide transport and metabolism |
H | 125 | 2.3 | Coenzyme transport and metabolism |
I | 154 | 2.9 | Lipid transport and metabolism |
P | 290 | 5.4 | Inorganic ion transport and metabolism |
Q | 90 | 1.7 | Secondary metabolites biosynthesis, transport and catabolism |
R | 414 | 7.7 | General function prediction only |
S | 307 | 5.7 | Function unknown |
- | 1642 | 30.6 | Not in COGs |