Table 4 Number of genes associated with general COG functional categories
Code | Value | % agea | Description |
|---|---|---|---|
J | 229 | 6.9 | Translation, ribosomal structure and biogenesis |
A | 2 | 0.1 | RNA processing and modification |
K | 127 | 3.8 | Transcription |
L | 111 | 3.3 | Replication, recombination and repair |
B | 0 | 0.0 | Chromatin structure and dynamics |
D | 41 | 1.2 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 64 | 1.9 | Defense mechanisms |
T | 109 | 3.3 | Signal transduction mechanisms |
M | 218 | 6.6 | Cell wall/membrane/envelope biogenesis |
N | 8 | 0.2 | Cell motility |
Z | 2 | 0.1 | Cytoskeleton |
W | 3 | 0.1 | Extracellular structures |
U | 48 | 1.4 | Intracellular trafficking, secretion, and vesicular transport |
O | 173 | 5.2 | Posttranslational modification, protein turnover, chaperones |
X | 3 | 0.1 | Mobilome: prophages, transposons |
C | 180 | 5.4 | Energy production and conversion |
G | 131 | 4.0 | Carbohydrate transport and metabolism |
E | 212 | 6.4 | Amino acid transport and metabolism |
F | 53 | 1.6 | Nucleotide transport and metabolism |
H | 113 | 3.4 | Coenzyme transport and metabolism |
I | 133 | 4.0 | Lipid transport and metabolism |
P | 167 | 5.0 | Inorganic ion transport and metabolism |
Q | 55 | 1.7 | Secondary metabolites biosynthesis, transport and catabolism |
R | 226 | 6.8 | General function prediction only |
S | 224 | 6.8 | Function unknown |
- | 751 | 22.7 | Not in COGs |