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Table 4 Number of genes associated with general COG functional categories

From: Complete genome sequence of Microbulbifer sp. CCB-MM1, a halophile isolated from Matang Mangrove Forest, Malaysia

Code Value % agea Description
J 229 6.9 Translation, ribosomal structure and biogenesis
A 2 0.1 RNA processing and modification
K 127 3.8 Transcription
L 111 3.3 Replication, recombination and repair
B 0 0.0 Chromatin structure and dynamics
D 41 1.2 Cell cycle control, cell division, chromosome partitioning
Y 0 0.0 Nuclear structure
V 64 1.9 Defense mechanisms
T 109 3.3 Signal transduction mechanisms
M 218 6.6 Cell wall/membrane/envelope biogenesis
N 8 0.2 Cell motility
Z 2 0.1 Cytoskeleton
W 3 0.1 Extracellular structures
U 48 1.4 Intracellular trafficking, secretion, and vesicular transport
O 173 5.2 Posttranslational modification, protein turnover, chaperones
X 3 0.1 Mobilome: prophages, transposons
C 180 5.4 Energy production and conversion
G 131 4.0 Carbohydrate transport and metabolism
E 212 6.4 Amino acid transport and metabolism
F 53 1.6 Nucleotide transport and metabolism
H 113 3.4 Coenzyme transport and metabolism
I 133 4.0 Lipid transport and metabolism
P 167 5.0 Inorganic ion transport and metabolism
Q 55 1.7 Secondary metabolites biosynthesis, transport and catabolism
R 226 6.8 General function prediction only
S 224 6.8 Function unknown
- 751 22.7 Not in COGs
  1. aThe total is based on the total number of protein coding genes in the annotated genome