Table 4 Genome statistics
From: Chromosomal features of Escherichia coli serotype O2:K2, an avian pathogenic E. coli
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 4,908,820 | 100.00 |
DNA coding (bp) | 4,320,149 | 88.01 |
DNA G + C (bp) | 2,488,281 | 50.69 |
DNA scaffold | 261 | - |
Total genes | 4938 | 100 |
Protein coding genes | 4672 | 94.61 |
RNA genes | 110 | 2.22 |
Pseudo genes | 156 | 3.16 |
Genes in internal clusters | 252 | 5.1 |
Genes with function prediction | 4209 | 85.24 |
Genes assigned to COGs | 4099 | 83.00 |
Genes with Pfam domains | 4713 | 95.44 |
Genes with signal peptides | 550 | 11.14 |
Genes with transmembrane helices | 1107 | 22.42 |
CRISPR repeats | 2 |