Table 3 Genome statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 3,346,045 | 100.00 |
DNA coding (bp) | 2,970,608 | 88.78 |
DNA G + C (bp) | 1,277,778 | 38.19 |
DNA scaffolds | 96 | 100.00 |
Total genes | 3341 | 100.00 |
Protein coding genes | 3236 | 96.86 |
RNA genes | 105 | 3.14 |
Pseudo genes | 0 | 0.00 |
Genes in internal clusters | 2523 | 75.52 |
Genes with function prediction | 2337 | 69.95 |
Genes assigned to COGs | 1688 | 50.52 |
Genes with Pfam domains | 2425 | 72.58 |
Genes with signal peptides | 310 | 9.28 |
Genes with transmembrane helices | 696 | 20.83 |
CRISPR repeats | 2 |