Table 9 Numbers and types of sequence variations (SNPs and INDELs) identified in the Type III effector genes (SNPs and INDELs) between the three newly sequenced strains and the reference stain GMI1000
Type | FJAT-91 | FJAT-452 | FJAT-462 |
|---|---|---|---|
All variants | 652 | 798 | 692 |
Missense variant | 268 | 350 | 299 |
Synonymous variant | 378 | 439 | 382 |
Frameshift variant | 2 | 4 | 6 |
Inframe deletion | 1 | 1 | 2 |
Inframe insertion | 3 | 3 | 2 |
Stop codon gain | 0 | 0 | 1 |
Stop codon loss | 0 | 1 | 0 |