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Table 8 Annotation and comparison of Type III effector genes in the three newly sequenced strains

From: Genome sequencing and analysis of Ralstonia solanacearum phylotype I strains FJAT-91, FJAT-452 and FJAT-462 isolated from tomato, eggplant, and chili pepper in China

 

FJAT-91

FJAT-452

FJAT-462

Number of T3E genes by Prokka annotation

52

62

60

Total T3E genes after homology search

72

78

75

Number of T3E genes not present in GMI1000

2

4

4

Annotation of T3E genes not present in GMI1000

ripAL

ripF2

ripAL

ripF2

ripS7

hyp7

ripAL

ripBE

ripF2

hyp7

Number of T3E genes in GMI1000 but not found in newly sequenced strain

7

3

6

Annotation of T3E genes in GMI1000 but not found in newly sequenced stain

ripAG

ripAI

ripM

ripP3

ripS4

ripY

hyp16

ripM

ripP3

hyp16

ripAI

ripAM

ripM

ripP3

ripS4

hyp16