Table 5 Genome and annotation statistics of the three newly sequenced Ralstonia solanacearum strains
Attribute | FJAT-91 | FJAT-452 | FJAT-462 | |||
|---|---|---|---|---|---|---|
Value | % of total | Value | % of total | Value | % of total | |
Genome size (bp) | 4,620,128 | 100.00 | 5,334,434 | 100.00 | 5,083,617 | 100.00 |
DNA coding (bp) | 3,003,037 | 65.00 | 3,696,229 | 69.29 | 3,397,556 | 66.83 |
DNA G + C (bp) | 2,799,660 | 60.60 | 3,324,908 | 62.33 | 3,123,835 | 61.45 |
DNA scaffolds | 329 | 100.00 | 309 | 100.00 | 358 | 100.00 |
Total genes | 6522 | 100.00 | 6729 | 100.00 | 6758 | 100.00 |
Protein coding genes | 6457 | 99.00 | 6658 | 98.94 | 6696 | 99.08 |
RNA genes | 65 | 1.00 | 71 | 1.06 | 62 | 0.92 |
Pseudo genes | NA | NA | NA | NA | NA | NA |
Genes in internal clusters | NA | NA | NA | NA | NA | NA |
Genes with function prediction | 2544 | 39.40 | 3075 | 46.19 | 2855 | 42.64 |
Genes assigned to COGs | 2714 | 42.03 | 3263 | 49.01 | 3046 | 45.49 |
Genes with Pfam domains | 2361 | 36.56 | 2948 | 44.28 | 2,674 | 39.93 |
Genes with signal peptides | 270 | 4.18 | 334 | 5.02 | 303 | 4.53 |
Genes with transmembrane helices | 291 | 4.51 | 349 | 5.24 | 311 | 4.64 |
CRISPR repeats | 0 | - | 0 | - | 0 | - |